| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0921 |
|---|
| Symbol | |
|---|
| ID | 8418741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1092163 |
|---|
| End bp | 1092927 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645037491 |
|---|
| Product | regulatory protein GntR HTH |
|---|
| Protein accession | YP_003197790 |
|---|
| Protein GI | 258405048 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.228784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.888898 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCAGT TTAAGGAATT CAAAAAACGA ACAGTCATGG AAAATCGGAC AGACCTGCTC
AACCAGTTGG GCACCATAGT TCTCGACCTC GGTCTGGAAC CCGGCGACCG GCTGCCGGCC
GAACGCCGCC TCTGCCAGCT CATGCATATA AGCAGGACCA CGCTGCGCAA TTTCCTGCGC
ATGCTTGAAG GGCGAGGGTT GGTGCAGACA AAGCGAGGAA GCGGGACCTA TCTCCGGGCC
AGAATCATCG GGACGTCTAA CGGCGAACTG GACATCAATC CCGATTTTCT CCCGCCCATA
GCCAATCAGC TGGAGGCAGC CTATCTGTTT CTGCCCCTGA TCATGGAACG GGCGCTGTAC
CAGATAACCG AGCGGCAGAT TCAAAACGTA CAAGAAAGCA ATATTGCCTT GGGCCAAAGC
ATCTATTCTG AAGACGTTAA AAGCATCATC TCAGAAATAT TCAACTTCTT TCGAATCATC
TCCCTGGCTA CCAATAACGA TTTTCTCATC AAGACGACCG AAAAGATCTG CTTTATCGAT
CCGCAGCCAT TTGAAAATAT ATTCAAGGTA GACCGCGAAA TTCGGGAACA GATCTTCGCC
GGACACGTCG ATATTCTTCA GGCGCTCCGG GAAACCAATG TCCTTGAGAT ACGCAAAATA
ACAGAAAACT ATGTCCTGAC CTGGTGCAAG ATACTCAAAA AACACGCGGG CATTTCCATG
CCCGCGTTCC TGGCCGGAAT CATAGAAAAA AGGGGGGAGC AATGA
|
|---|
| Protein sequence | MNQFKEFKKR TVMENRTDLL NQLGTIVLDL GLEPGDRLPA ERRLCQLMHI SRTTLRNFLR
MLEGRGLVQT KRGSGTYLRA RIIGTSNGEL DINPDFLPPI ANQLEAAYLF LPLIMERALY
QITERQIQNV QESNIALGQS IYSEDVKSII SEIFNFFRII SLATNNDFLI KTTEKICFID
PQPFENIFKV DREIREQIFA GHVDILQALR ETNVLEIRKI TENYVLTWCK ILKKHAGISM
PAFLAGIIEK RGEQ
|
|---|
| |