| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0906 |
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| Symbol | |
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| ID | 8418726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1073783 |
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| End bp | 1075948 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645037476 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_003197775 |
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| Protein GI | 258405033 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00297293 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTGT GGCCCGGTTT TCCGTATCCT TTGGGCGCGA CCTATGACGG GGCGGGAACA
AATTTTTCCC TGTTTTCCGA AATCGCGGAG CGAGTGGAGC TTTGTCTTTT CGATGATGGG
GGGCAGGAAG AGCGGGTCGC CTTGCCGGAA GTGACCGGCT ATTGCTGGCA TGGCTATTTC
CCGGGCATTG AACCGGGGCA ACGCTACGGG TTCCGCGTCC ATGGCCCCTG GCGTCCAGAA
CACGGGCACC GCTGTAATCC AGCCAAACTG CTTCTCGATC CGTATGCCAA AGCGATTGAA
GGACAAATTG AATGGCACGA GGCGGTTTTT CCCTACCAGT TCGACGACGG GCCGGCGGTG
GCGAGCGCCG AAGACAGTGC CCCCTATATC CCACGGTGTA TCGTGCACCA GCCCCATTTC
GATTGGAATG GCGATCGGAG GTTGCATCTG CCGTGGCATG AGACGGTTAT CTATGAGACC
CATGTCAAAG GATTCAGCGC CATGCATCCG GACATTCCGG AAGCAATACG CGGCACCTAC
GCCGGATTGG CCCATCCGGT GGCCGTACAG CATCTGAAAG AACTCGGCGT GACCGCGGTG
GAATTGATGC CCATCCACCA GTTTGTCCAC GACAAACATC TGGTGGACAA GGGGCTTCGC
AATTATTGGG GCTACAATTC CATCGGGTAT TTTGCCCCGC ACAACGAGTA CGCTGCCGAC
CCGCGGCCGG GAGCGGTGGT GGCCGAATTC AAGCAGATGG TCAAGGCGCT GCATCAGGCG
GGCATCGAGG TCCTGCTCGA CGTAGTTTAC AACCACACCG GCGAAGGCAA CCAGTACGGC
CCCATGCTCT GTTTCAAGGG CATCGACAAC GCCTACTACT ATCGGACCAG TTTCGAGGAC
CCGTTTTATT ACATGGACTA TACGGGGACC GGAAACAGCC TGAACATGCG CCATCCCCAC
GTTTTGCAGC TTTTGATGGA TTCCTTGCGG TATTGGGTGC AGGAGATGCA TGTCGACGGT
TTCCGCTTTG ATCTGGCCGC GACCCTGGCC CGCGAACTCC ACGATGTGGA TAAATTATCC
GCTTTTTTTG ACATCATTCA GCAAGATCCA GTGCTCAGTC AGGTCAAACT CATTGCCGAA
CCATGGGATG TCGGGGAAGG CGGCTACCAG GTCGGCAATT TCCCGCCAGT GTGGTCGGAG
TGGAACGGCA AATACCGCGA TTGTGTCCGC GATTTCTGGC CCGGCCGCGA CGAGATGCTC
GGGGAGTTCG CGGCTCGGTT TACCGGCAGT TCCGATCTGT ATGAAAATAC CAGTCGGTTG
CCGTTTGCGA GCATCAATTT TGTGACCGCG CACGACGGAT TCACCCTGCG CGATCTGGTC
TCCTACGACC GCAAACACAA TGAAGCCAAT GGGGAGAATA ATCGTGACGG GGCCGACGAC
AACGCCTCCT GGAATTGCGG CGTGGAAGGG GAGACCGAGG ATCCGGAGAT CGTAAAACTC
CGGGCACGGC AGCAGCGCAA TTTTTTGACG ACCCTGTTTC TTTCCCAGGG TGTGCCCATG
CTCCTGGGCG GCGATGAGAT GGGCAGGACC CAGGAGGGCA ACAACAACGC CTATTGCCAG
GACACGCCGT TGTCTTGGTA TGATTGGGAG GGTGCGGACA GCGCGCTTTT GGATTTTTGT
CGCCGACTCA TCGACTTCCG GCACCGCCAT CCGGTTTTCC GTCGCCGCCG CTGGTTTCAA
GGCCGGGCGA TCCATGGGCC GGAGGTCACG GATATCGCCT GGTTCACCCA TGAAGGGACC
CAGATGGAGG AGGAGCATTG GGACGAAGGA TTTGCCAAAT CTTTGGGCGT GTATCTCAAT
GGCGAAGCGA TTCCCAACCC CTACCCCAAA GGCGATCCCA TCACCGACGC CAGTTTTTAC
GTTATTTTCA ACGCCCACTA CGAGGCACTG ACTTTCACCC TGCCCGCCCC GGAGTGGGGA
CAGGCCTGGC TCTTCGAACT CGATACCGAT ACGGGGTGGG CTGAAGAGGC AACGCGGTAT
CAGGCCGGAG CGGCCCTGGA GGTCACGGCC CGCTCCCTTG TGGTCCTGCG GCAAGATGAA
GACCAGGACG AAATGGATGC GGCGGCAACC GCGAGTGGGG TCAAGGCCAG CGGCAGTGCA
TCCTGA
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| Protein sequence | MKVWPGFPYP LGATYDGAGT NFSLFSEIAE RVELCLFDDG GQEERVALPE VTGYCWHGYF
PGIEPGQRYG FRVHGPWRPE HGHRCNPAKL LLDPYAKAIE GQIEWHEAVF PYQFDDGPAV
ASAEDSAPYI PRCIVHQPHF DWNGDRRLHL PWHETVIYET HVKGFSAMHP DIPEAIRGTY
AGLAHPVAVQ HLKELGVTAV ELMPIHQFVH DKHLVDKGLR NYWGYNSIGY FAPHNEYAAD
PRPGAVVAEF KQMVKALHQA GIEVLLDVVY NHTGEGNQYG PMLCFKGIDN AYYYRTSFED
PFYYMDYTGT GNSLNMRHPH VLQLLMDSLR YWVQEMHVDG FRFDLAATLA RELHDVDKLS
AFFDIIQQDP VLSQVKLIAE PWDVGEGGYQ VGNFPPVWSE WNGKYRDCVR DFWPGRDEML
GEFAARFTGS SDLYENTSRL PFASINFVTA HDGFTLRDLV SYDRKHNEAN GENNRDGADD
NASWNCGVEG ETEDPEIVKL RARQQRNFLT TLFLSQGVPM LLGGDEMGRT QEGNNNAYCQ
DTPLSWYDWE GADSALLDFC RRLIDFRHRH PVFRRRRWFQ GRAIHGPEVT DIAWFTHEGT
QMEEEHWDEG FAKSLGVYLN GEAIPNPYPK GDPITDASFY VIFNAHYEAL TFTLPAPEWG
QAWLFELDTD TGWAEEATRY QAGAALEVTA RSLVVLRQDE DQDEMDAAAT ASGVKASGSA
S
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