Gene Dret_0881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0881 
Symbol 
ID8418700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1040136 
End bp1041173 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content58% 
IMG OID645037450 
Productlipoyltransferase and lipoate-protein ligase 
Protein accessionYP_003197750 
Protein GI258405008 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0095] Lipoate-protein ligase A 
TIGRFAM ID[TIGR00545] lipoyltransferase and lipoate-protein ligase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0333925 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.884852 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTGCA TCTGGAACCA TTCCACTGAT CCGGCCTTCA ATTTGGCCAT GGAAGAATAC 
TGCCTGACCC AGCGTCAGGA GGATTTTTTG CTCCTGTGGC GCAATCGACC GGCGGTGATT
ATCGGGAAAA ATCAAAACGC CAGAGCGGAA ATCCACTCCG CCTTTGTTGA GGAACATGAT
ATCGCCGTTA TCCGGCGTCT TTCCGGTGGT GGCGCGGTCT TTCACGACCT CGGCAATGTC
AATTTTACCT TTATCGCCTC ACATAGCGGG GAAAAGCGTA TTGATTTCCG CCGATTCGCC
GAGCCGGTGG TTCAAGCGTT ACAGTCGCTT GGCGTGCCGG CTGTTTTTGA CGGGCGTAAC
GATGTGACCG TCGAGGGGGC CAAGATCTCC GGCAACGCGC AATATGTCCA TAAAAATCGC
GTCCTGCACC ACGGCACTCT TTTGTTCGCC GCTGATACCC GTCTTCTGTC CGGGGCCCTT
CGAGCGGATC CGCTCAAGTT CGCGACCAAG GCGGTCAAAT CGGTCCGCAA ACGGGTAGCC
AATATTGTTG ATTTTCTACC CCAGGCCCTG GATGTAGAGA CATTTATGGC CACTTTGCTG
GAGTATTTTC TGTCCCACAA TCCGGAGAGT ACGGTAGCTG GTTTCAGTGA CGCAGACACC
GAAGCCATAA CCGCGCTACG CGAGGCCAAG TATGCCACCT GGGAGTGGAA TTTCGGGGCT
GCCCCGCCGT ATACCCAGCG TTACGTGCTG CGTTCGGCTG CGGGGGGGAC GTTGGAAGCG
GCCCTGGATG TCCGGGGCGG GGCTATTCAA AACGCTCGGA TTTGGGGGGA CTATTTCGGG
GTGCGCTCTA TTGGAGATGT CGAGGCCAAG CTCCACGGGG TCGCGCTGAC GAAGGAGGCG
CTGTACGCAA CCCTCGCCGA GCTGCCGTTG GAAGCGTACC TCTGGAATAT CGATCTCGAG
GAACTGCTGG CTGTGTTGCT TGGGCAGCCT CCGGCACAGC CTCGGGAAGT GGCGGATCCT
GCTGCGGCGG GCTCCTGA
 
Protein sequence
MLCIWNHSTD PAFNLAMEEY CLTQRQEDFL LLWRNRPAVI IGKNQNARAE IHSAFVEEHD 
IAVIRRLSGG GAVFHDLGNV NFTFIASHSG EKRIDFRRFA EPVVQALQSL GVPAVFDGRN
DVTVEGAKIS GNAQYVHKNR VLHHGTLLFA ADTRLLSGAL RADPLKFATK AVKSVRKRVA
NIVDFLPQAL DVETFMATLL EYFLSHNPES TVAGFSDADT EAITALREAK YATWEWNFGA
APPYTQRYVL RSAAGGTLEA ALDVRGGAIQ NARIWGDYFG VRSIGDVEAK LHGVALTKEA
LYATLAELPL EAYLWNIDLE ELLAVLLGQP PAQPREVADP AAAGS