| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0878 |
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| Symbol | |
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| ID | 8418697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1036483 |
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| End bp | 1038765 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645037447 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003197747 |
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| Protein GI | 258405005 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.210313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.808443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCATT TCTGGCATTT TTTGCGCCAT TCCCTTTTCG CCAAGATCAT TCTCTCCGCC
GGAGCGACCC TCCTGGCCGG TTGCCTATTA CTTATTCTCC TGCACACCAG ATACCACAAA
CATGTGGTTT TCGACTTTGT TCACACCGGC GGCGAGCGGT TGTCCACCAC GATCAAACAG
GGCACCCACT ACGCCATGAT GCTCAATTCC CGGGAGGATA TTGCACAGAC GATCGCCAAT
ATCAGCAAGC AGGAGGCGAT AACCGCCATC CGTATTTTCA ATAAACAGGG CGCCATCAAA
TATTCCAGCC ACCCCGGGGA GGTCGATACC CACGTTGCCC GCACGGCGCC GGTTTGCTCC
TCGTGTCACC ATAACGGCGG GCTTAAGCCA GACAGCGATA TTTCCCAGCG CACCCGCATC
CTCCCGGCGA CGGAAAACAC CCCCCGTCGC ATGGGAATTG TCACCCCGAT CGAAAACCAG
CCCTCATGTT CCCAGGCCTC CTGCCACGTC CACCCCGCCA CTGACAATGT GCTCGGCATT
CTGGAAGTGG TCATGTCCCT GAAAAATACC GACCAGGAAC TGGCGAGTTT CAATCAGCGC
ACTCTGCTTT TCGGCACACT CGTCTTCGCC CTGACCGGGG TGGCGATATT CTGGACCATC
TACCGTTTCG TCAAACGACC AGTCAGGGAT CTCATCCGGT ATACACGTCG CATCAGTTCC
GGCGCCCCCC CGACCGCCAT TCTCTCCCTG GACCAGAGTG ATGAAATTGG AGAGCTGGCC
TCGGCCGTGT CCACCATGCA CGAAAAAATC AACGAAAAGC ACAAGGAGTT GTTGCACCAG
AAAGAAGAGT ACCAGACCCT TTTCGATCAC GTACCATGCA TTGTCACCGT GCAGGACCGA
AACTTCCAGC TTATCAGCTA CAACCGGGAA TTCTCGGATA AATTCAACCC GAGCGCCGGT
GATTTCTGCT TCCGGGCTTA CAAGGGCCGC CATGAAAAAT GTCCTGACTG TCCTGTGGAG
CGGACCTTTG CCGACGGCTG CAGTCATTCC AGCGAGGAGA GCGTGGTCCG CGACGGTCAG
GAAGTCCACT GGCTGGTAAC CACCTCCCCG ATCTGCGACG CTGAAGGCCG CATCGTGGCC
GCAATGGAGA TGTGCTTGGA CATCACGCCG CGCAAGCGAC TCGAACGCCA GCTGGCCATG
TCCGAAAAAA AATACCACGC GATTTTCAAC AATATTCCCA ATCCCGTCTT TGTTCTGGAT
CCCGAAAAAC TCTTCATCCT GGACTGCAAC GACAGTGTGC AGGCCGTATA CGGCTACACC
CGGGAGGAGA TTCTCAACCG TCCCTTCGCC GACCTTTTTT TCGACGACGA CCGCGACCAT
TACCTCCCCC GGCTCCATGA ATGTCTGGTC ATCAACCAAG CCCGGCAACA AACGAAAGAC
AAACGGCGAA TCTTCGTGAC CATTCGAGTC TCGCCCTCCC AATACCCCGG ACAGCAGGTT
CTCCTGGTCA CCACCAGCGA CATCACCAAG CGTCTGGAAG CCGAGCAGCA GCTCATCCAA
GCCAGCAAAA TGGCCACTTT GGGGGAAATG GCCACCGGCG TCGCCCACGA ACTCAACCAA
CCCCTGTCGG TGATCAAAAC CGCCAGCACC TTTTTCGTCC GCAAAATCGA CAAGAACGAG
CCCATCGCCC CCGAAACGCT GGCCTCCATG GCCCGTGAAA TCGACGGGCA TGTGGACCGG
GCCACCAAAA TCATCAATCA CATGCGGGAA TTCGGCCACA AGTCCGAGCA CAAACTCTAC
CCCGTGCAGG TCAACACCGT CTTGCAGCGC GCGTTTGAGA TTTTCAGTCA ACAGCTCAAA
TTGCGTCAGA TCGAGATTTC CTGGAACCTT GAAACCGCCT TGCCCCACAT CCAAGCCGAT
CCCGACCGCT TAGAGCAAGT TTTTATCAAC CTGCTCATCA ACGCCCGAGA CGCCATTGAA
ACCCGGCATG CCTCGGCCCC GGAAAAGGCG GAAAAGCGGA TTACTCTGGC CAGTCGGTTC
GCCGACGACC AGGTCCAGGT CTGTATCACC GACTCCGGGA TCGGCATTGC CCCCGGTGAC
CGGGACAAGA TTTTCGAACC CTTCTACACG ACCAAGGAAG TCGGCAAAGG CACCGGCCTG
GGGCTGTCCA TCAGCTATGG CATCATCCAG GAGTGTGGTG GCCGGATTAC CGTCTTCTCC
CACGGCCCCG GACACGGGGC GACATTCAGC CTCCATTTCC CTCCCCACCC GACAAGTGCA
TGA
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| Protein sequence | MRHFWHFLRH SLFAKIILSA GATLLAGCLL LILLHTRYHK HVVFDFVHTG GERLSTTIKQ
GTHYAMMLNS REDIAQTIAN ISKQEAITAI RIFNKQGAIK YSSHPGEVDT HVARTAPVCS
SCHHNGGLKP DSDISQRTRI LPATENTPRR MGIVTPIENQ PSCSQASCHV HPATDNVLGI
LEVVMSLKNT DQELASFNQR TLLFGTLVFA LTGVAIFWTI YRFVKRPVRD LIRYTRRISS
GAPPTAILSL DQSDEIGELA SAVSTMHEKI NEKHKELLHQ KEEYQTLFDH VPCIVTVQDR
NFQLISYNRE FSDKFNPSAG DFCFRAYKGR HEKCPDCPVE RTFADGCSHS SEESVVRDGQ
EVHWLVTTSP ICDAEGRIVA AMEMCLDITP RKRLERQLAM SEKKYHAIFN NIPNPVFVLD
PEKLFILDCN DSVQAVYGYT REEILNRPFA DLFFDDDRDH YLPRLHECLV INQARQQTKD
KRRIFVTIRV SPSQYPGQQV LLVTTSDITK RLEAEQQLIQ ASKMATLGEM ATGVAHELNQ
PLSVIKTAST FFVRKIDKNE PIAPETLASM AREIDGHVDR ATKIINHMRE FGHKSEHKLY
PVQVNTVLQR AFEIFSQQLK LRQIEISWNL ETALPHIQAD PDRLEQVFIN LLINARDAIE
TRHASAPEKA EKRITLASRF ADDQVQVCIT DSGIGIAPGD RDKIFEPFYT TKEVGKGTGL
GLSISYGIIQ ECGGRITVFS HGPGHGATFS LHFPPHPTSA
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