| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0871 |
|---|
| Symbol | |
|---|
| ID | 8418690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1028924 |
|---|
| End bp | 1029838 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645037440 |
|---|
| Product | UspA domain protein |
|---|
| Protein accession | YP_003197740 |
|---|
| Protein GI | 258404998 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.225808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.70038 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA AGATCCTTTT CGCCACCTCC GGCTCGCCGG CCTGCGACAA CGCCGCTCGC
GTGGCGTTCG ACATGGCCAA GCGCTACGAC GCTGAGCTGG TCCTGTTCCA CTCCCTGGGG
GTGCCCACCA GGGGGTTCAG CCAGATTGTC GTCGATGTGC GCACCGGTGA GGAAGTCAGT
TTTGACGAGG ACTACACGAC CTGGGTCGAG GAAGAATTGC GTACGACCTA CGCCAAACAG
TTGGAGACCC TCTCCAAGGC CCGGGTCGAA ATCCGCGTCG GACTGCCGCA CACGGAAATC
CTGCGCCTGG CCCGAAAGGA AGAAGTGGAC CTGATCGTCA TGGGCGCTAG CACCCGGGAT
TCCGAACCTG AGGCACCGCA CCGCCGCGGC TTTGCCGGTA GCACGCTGCA AAAAGTAGCC
CGAGGGGCGA AATGCCCTGT GCTGACCATC CACCGGCCTG TGGCCTCGTT CTGGGGCGGA
TTCTCGAATA TCGTCTTTGG TACGGATTTT TCCAAAGCGG CCAACTACGC CTTTCGCTTC
GCTCTGAATG TGGCCCGGGA ACTCGATTGC AAGCTGCACA TCTTCCACGC CCTGGATATC
AATACCACCG TTGGTCAATT CCAGGCCCAG GACACCATCG AAGACAAGCT TATCGAAGCC
AGACGGCGGA TGCGCGCCCT GTATGAGCCT CAAATGGACG GATTCACCAA TTATGAATTC
GAGGTTTGGG AAGGGGTGCC CTTTGTGGAG ATCGTCAAAT TCACCCGTGA ACGCCAGGCG
GATCTGCTGG TCATGGCCCA CCACACCCGG GAGACCGATC CGGAGAAGGC ACGTCTGGGC
AGCACCCTGG AACAGGTTGC GTTGCGGGCC ACCTGCCCGG TAGCCAGCCT CAACCGGGCC
CCGAAAAACG AATAA
|
|---|
| Protein sequence | MFKKILFATS GSPACDNAAR VAFDMAKRYD AELVLFHSLG VPTRGFSQIV VDVRTGEEVS
FDEDYTTWVE EELRTTYAKQ LETLSKARVE IRVGLPHTEI LRLARKEEVD LIVMGASTRD
SEPEAPHRRG FAGSTLQKVA RGAKCPVLTI HRPVASFWGG FSNIVFGTDF SKAANYAFRF
ALNVARELDC KLHIFHALDI NTTVGQFQAQ DTIEDKLIEA RRRMRALYEP QMDGFTNYEF
EVWEGVPFVE IVKFTRERQA DLLVMAHHTR ETDPEKARLG STLEQVALRA TCPVASLNRA
PKNE
|
|---|
| |