| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0858 |
|---|
| Symbol | |
|---|
| ID | 8418677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1015966 |
|---|
| End bp | 1017018 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645037427 |
|---|
| Product | putative RNA polymerase, sigma 70 family subunit |
|---|
| Protein accession | YP_003197727 |
|---|
| Protein GI | 258404985 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000347952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.310936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATA CTGAAAATAA AGACATCAAT TCTATGGAAC ACGAGCACGA TCACGATATC
GAACTCGATG AGCCCGAAGC CGGTGAGACC CTTGATGATT CCACCGCTGA AGAGGCGTCG
GCCGAATCCC TTCCGGCACC TGCCGCGGTG ACAGAACACC TGCCGTCGCT CATCCAGCCG
TCGAGCAACG ATGTCGCCAT TCAGGATCCG CTCAAACTTT ACTTGCGCGA GGTCAATCGC
TTTCCGTTGC TGGAGCCGGA CGAGGAAGTG GAATTGGCCC GGCGGGTCCG TGATGAAAAC
GATCAGTCTG CAGCCTTCCG CCTGATCAGT TCCCACCTGC GTTTGGTGGT CAAGATCGCC
ATGGAGTTCC AACGGCGGTG GATGAAAAAT GTCCTTGATC TGGTCCAGGA GGGCAATGTG
GGGCTGATGA AGGCGGTCCA AAAATTCGAC CCCGAGCGGG GTATTAAATT TTCCTACTAC
GCCTCGTTCT GGATCCGGGC CTATATCCTG AAGTTCATTA TGGACAACTG GCGTATGGTC
AAATTGGGAA CCACCCAGGC CCAGCGCAAA CTGTTCTACA ATTTGAGCCG AGAAAAACAG
CGGTTGCAGG CCCAGGGTTT CGACCCCGAC GCCAGTACTC TCTCAGAGAA TCTGGATGTC
AGTGAAGAAA GTGTCGTGGA AATGACCCAG CGCCTCGGCG GACATGATCT TTCCCTGGAC
GCCCCCCTGG GCGAAGACTC CTCGAGTTCG CGCATGGATT TCCTTCCAGC CTTGGGGGCA
GGCATCGAGG AGTCGCTGGC CCAGCAGGAA ATGGGCTCTG CCCTGCGTCA GCATCTGCAG
ACGATTCTGC CGAAACTCAA CGACAAGGAA AAGGAAATCC TGGAACACCG ATTGCTGACT
GACAGCCCGG TTACCCTGCG GGAAATCGGG GAAAAATACG GAATCACCCG CGAACGCGTC
AGACAAATCG AGTCCAGACT CCTGCAAAAA CTCAAAACCC ATCTCTCCTC AGAAATCCAA
GACTTTTCCG AAGACTGGAT CGAGCATGAA TAA
|
|---|
| Protein sequence | MKHTENKDIN SMEHEHDHDI ELDEPEAGET LDDSTAEEAS AESLPAPAAV TEHLPSLIQP
SSNDVAIQDP LKLYLREVNR FPLLEPDEEV ELARRVRDEN DQSAAFRLIS SHLRLVVKIA
MEFQRRWMKN VLDLVQEGNV GLMKAVQKFD PERGIKFSYY ASFWIRAYIL KFIMDNWRMV
KLGTTQAQRK LFYNLSREKQ RLQAQGFDPD ASTLSENLDV SEESVVEMTQ RLGGHDLSLD
APLGEDSSSS RMDFLPALGA GIEESLAQQE MGSALRQHLQ TILPKLNDKE KEILEHRLLT
DSPVTLREIG EKYGITRERV RQIESRLLQK LKTHLSSEIQ DFSEDWIEHE
|
|---|
| |