| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0818 |
|---|
| Symbol | |
|---|
| ID | 8418636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 966115 |
|---|
| End bp | 967764 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645037386 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003197687 |
|---|
| Protein GI | 258404945 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCATA AAGACTGTTT TTCGAGTTTG GACGACTTTA CCGATAATTG GCGTGTGCCC
CAATGGACAG GATTTAATTT CGCTTACGAC GTGGTGGACC ATATGGCCCA AACTTCCCCG
GAGAAGATCG CGATGGTCCA TGTCGATGAT GCCCACGTCA GACGAGACTA TACGTTTGAA
TTTTTTGCCG AAGCATCCAG CCGGCTGGCT CACGCTCTGG TCAAACAGGG ACTCGGTCAA
GGGGACCGGG TTATGCTCAT GCTCAACCGC CGCATTGAGT TCTGGCTCGG TATGCTTGCT
TTGCACCGCA TTGGAGCTGT GGCTGTGCCG TCGCCGTCCA TGCTGACAAG TAAGGATATC
GAGTTCAGGG TCAATTTTGC CGGTATCAAA GGCGTTTTTG CTGAAGACGC TCTGATCGAC
AATTTTGAAA CGGTGCGCCC GAAATGCCCG GGGCTGAAAG TCTGTATCCA CACCGGGACC
GAGGTCCAGG CTCAGGGCTG GCTTGCCTAT GAGACCCTTG TGGCCGAGGA AGCGACCAAG
TTCGAACGTC CAAAGGATGC GGCCGCTGAC AACGATCCCC TGCTGATCTT TTTTTCTTCG
GGAACGACGG GGCCGCCGAA AATGGTCGAA CACACCCACC GTTATCCCCT GGGGCATATT
GTGACCGGGA TGTATTGGCA TGATCTTGAG CCCGGAGATC TCCATCTGAC CCTGGCCGAT
ACAGGGTGGG GGAAAGCAGT CTGGGGGAAA TTTTACGGCC AGTGGATGGC TGGCGCAGCG
ATTTTCGTCT ACGATTTCCG GGGAAAATTT GATCCCCACA ATTTGTTGTC CGTGTTGGCG
GAGCACAAAG TGACGTCCTT TTGCGCTCCC CCGACTGTTT ACCGATTTCT CGTCCGGCAA
GACCTCGGGC CCTATGACCT GTCGGCATTG CGCCATTGCA CAACGGCTGG GGAATTGCTG
AATGAAGGGG TTTTTCTGAA ATGGCGGGAG AAGACCGGAC TTCCGATCTA CGAAGGCTAC
GGTCAAACTG AGACGTCGCT GCAAATCGCC ACTTTTCCCT TTATGGACCC CAAGCCGGGC
TCCATCGGCA AGGCCACCCC GCAATGGGAT GTCGTCCTGC TTGATGAAAG CGGTCAACCG
TGCCCCCCGG GCGTTGAAGG CGAGATCTGT ATTCGTATCG CTGATGCAGA ACCGGAGGGA
TTGTTCACCG GCTATCTGGA TGAACCGGAA AAAACCCGGG CCGTGAAAAC GAATGGCTAC
TACCATACCG GAGACAAGGC CTGGATGGAT GAAGACGGGT ATTTCTGGTT TCTTGGCCGT
GTGGATGATC TGATCAAAAG TTCAGGATAC CGCATCGGCC CTTTTGAGGT CGAAAGCGCC
CTGATCACCC ACCCTGGTGT CGTGGAGGCC GCCGTAACCG CAGTGCCGGA TGAGATTCGC
GGCCAGGCGG TCAAGGCCAC GGTGGTCCTG GCCAAGGGGT ATACGCCATC AGAGGCGTTG
ACCAAGGAGT TGCAGGACCA TGTCAAACAG GTCACCGCGC CCTATAAATA TCCCCGTATC
ATTTCCTACG TCGATGACTT GCCCAAAACC ATAAGCGGCA AGATCAAGCG GGCTGAGATC
CGAGCGCAAG ACGAGCATCA CCAGGTTTGA
|
|---|
| Protein sequence | MLHKDCFSSL DDFTDNWRVP QWTGFNFAYD VVDHMAQTSP EKIAMVHVDD AHVRRDYTFE
FFAEASSRLA HALVKQGLGQ GDRVMLMLNR RIEFWLGMLA LHRIGAVAVP SPSMLTSKDI
EFRVNFAGIK GVFAEDALID NFETVRPKCP GLKVCIHTGT EVQAQGWLAY ETLVAEEATK
FERPKDAAAD NDPLLIFFSS GTTGPPKMVE HTHRYPLGHI VTGMYWHDLE PGDLHLTLAD
TGWGKAVWGK FYGQWMAGAA IFVYDFRGKF DPHNLLSVLA EHKVTSFCAP PTVYRFLVRQ
DLGPYDLSAL RHCTTAGELL NEGVFLKWRE KTGLPIYEGY GQTETSLQIA TFPFMDPKPG
SIGKATPQWD VVLLDESGQP CPPGVEGEIC IRIADAEPEG LFTGYLDEPE KTRAVKTNGY
YHTGDKAWMD EDGYFWFLGR VDDLIKSSGY RIGPFEVESA LITHPGVVEA AVTAVPDEIR
GQAVKATVVL AKGYTPSEAL TKELQDHVKQ VTAPYKYPRI ISYVDDLPKT ISGKIKRAEI
RAQDEHHQV
|
|---|
| |