| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0801 |
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| Symbol | |
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| ID | 8418619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 949100 |
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| End bp | 951136 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645037369 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003197670 |
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| Protein GI | 258404928 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAGC AGTCTGTTCA AAGCCGGGTG GCCTCCTTGC GCGAAACCAT TCGGCACCAC
GATTATCTCT ATTATGTCCT GGATGCTCCC CAGATAAGCG ATAACGAGTA TGACGCCCTG
TTTAAGGAAC TCCAGGCGCT GGAACACCGG TACCCCGAGT TGGATGACCC CGCCTCACCC
ACCAAGCGGG TGGGGCAGAA ACCTTTGGCT GCCTTTGCCC ACCGCGAACA CAGTCTCCCC
ATGGCCAGTC TGGACAATGT TTTTTCCCTG GAGGAATTCC AGACCTATGT CCAGCGTCTG
GAGCGACTCC TTCCCGGTGA AGAGATCACC TTCTGGGTTG ATCCCAAGAT GGACGGACTG
GCGGTCGAGG TGATTTTTGA GGCCGGCCGG TATGTCGCGG CTTGCACCCG GGGCGATGGC
CGGGTGGGCG AGGACGTCAC CGCCCAGATG CGTACGGTGC GCACTGTCCC TTTGCAATTG
CGCGAAGAAG GGGTCGAGGT GCCCGACTAC ATCGAGGTCC GCGGGGAGGT GGTCATGCAT
GAAGACGATT TTGCCCTGCT CAACAAACGG CAAACCGAGA ACGGAGCCCG CCCATTTGCC
AACCCGCGCA ATGCCGCGGC TGGTTCGGTG CGCCAATTGG ACCCGGAAGT GACGGCCAAA
CGCCCGTTAC GTTTTTTCGC GTATGGCGTC GGAGTGGTGC GCTGGTCCGG AGCAAAAACG
GTCTGGTCGC GGCAGTCCGA GGTCATGCAG GGGTTGCGCG AACTGGGACT GCCGGTTGCC
CCCAAAGCCC GCTGGGCCGA GAGTGCTGCA GCGGTGCAGA CCTATTACCA GGACCTTGGC
GCCAACCGCC ACTCGCTGGG CTTTGAAATC GATGGGGTGG TGGCCAAGGT GGACCGGCTC
GAGCAACAGC ACCGTCTGGG CAGCACTTCC CGGGCGCCCC GCTGGGCTTT GGCCTTGAAA
TTTCCCGCCC ACCAGGCGGA GACGGTATTG GAAGATATCC AGGTCCAAGT GGGGCGCACC
GGGGTCTTGA CTCCCGTGGC CGTGCTGCGG CCGGTGGAGG TTGGGGGCGT CACGGTCTCC
CGGGCCACGC TGCACAATGA AGATGAGATC CGGGCCAAGG GCCTTCGAGT GGGCGATCCG
GTGCTTGTCC AGCGCGCCGG AGACGTCATT CCGGAAGTGG TGCGTCCTTT GACTGACAAA
CGTACCGGAG AGGAGAAAAC ATTTGTTTTC CCCCAGACCT GCCCGGCGTG CGGCAGCCCG
GTTTCTCGGC TCGGCGATGA AGTGGCCAGG CGGTGCGTGA ACGCCGCCTG TCCGGCCCAG
GTCGTTCAGC AACTCATCCA TTTTGTCTCC AAGGCCGGGC TGGATATTGA AGGTCTGGGG
GAGCGCTGGG TTCAGATTTT CGTGGACCAG GGGCTGGTCC GCTCCCCGGC TGACCTCTTT
CGGCTGAAGG AAAGAGACCT GGTGCCGCTG GAGCGCATGG GCGATAAATC GGCCCGGAAC
ATGATCCAGG CCATTGCAAG CGCCAAATCC TCGGCCCGGC TGGACCAACT TATCAGTGCC
CTGGGCATCC GGCTGGTAGG GCGGCGGACC GCCGAAATCC TGGCTACCTC GTTTGAGGAC
CTTGAGGCCC TGGCGGAGGC CGATTCTGAA ACTCTGCAGC ACATCCCGGA TATCGGACCG
GAAGTGGCCG CCTCACTGCG CCGTTTTTTT ACCACCCCGG CCAACCAGGC GCTCATTCGG
GATCTGCACC AACTTGGCGT GTGGCCACGG CGCGAGACTG GCAACGGATC TGATGCGGAC
CAGTCTGCCC CTCTGGAAGG ACTGCGTTTT GTTCTGACCG GGGCGTTGTC GGACATGAGC
CGGAGTGCGG CCAAGGATGC TATCGAGTCC CGTGGGGGCA AGGTGGTCAG CGCTGTTTCC
AGTAAGGTGG ATTACGTGGT CGCTGGGGAG AATCCGGGCA GCAAGCTGGA TAAGGCCCGG
GAACTGGATA TCGCCGTTCT CGACGAGACG GGGCTTCACG ACCTTTTGGC TGGGTAG
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| Protein sequence | MAEQSVQSRV ASLRETIRHH DYLYYVLDAP QISDNEYDAL FKELQALEHR YPELDDPASP
TKRVGQKPLA AFAHREHSLP MASLDNVFSL EEFQTYVQRL ERLLPGEEIT FWVDPKMDGL
AVEVIFEAGR YVAACTRGDG RVGEDVTAQM RTVRTVPLQL REEGVEVPDY IEVRGEVVMH
EDDFALLNKR QTENGARPFA NPRNAAAGSV RQLDPEVTAK RPLRFFAYGV GVVRWSGAKT
VWSRQSEVMQ GLRELGLPVA PKARWAESAA AVQTYYQDLG ANRHSLGFEI DGVVAKVDRL
EQQHRLGSTS RAPRWALALK FPAHQAETVL EDIQVQVGRT GVLTPVAVLR PVEVGGVTVS
RATLHNEDEI RAKGLRVGDP VLVQRAGDVI PEVVRPLTDK RTGEEKTFVF PQTCPACGSP
VSRLGDEVAR RCVNAACPAQ VVQQLIHFVS KAGLDIEGLG ERWVQIFVDQ GLVRSPADLF
RLKERDLVPL ERMGDKSARN MIQAIASAKS SARLDQLISA LGIRLVGRRT AEILATSFED
LEALAEADSE TLQHIPDIGP EVAASLRRFF TTPANQALIR DLHQLGVWPR RETGNGSDAD
QSAPLEGLRF VLTGALSDMS RSAAKDAIES RGGKVVSAVS SKVDYVVAGE NPGSKLDKAR
ELDIAVLDET GLHDLLAG
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