| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0777 |
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| Symbol | |
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| ID | 8418593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 921724 |
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| End bp | 924783 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645037344 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_003197647 |
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| Protein GI | 258404905 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTTC ACACTTTCCT TTCCGAGAGA CTCTTTTCCC TTATCCTGGT GCTTATACTT
GGCATCAGCG CTGGGAGTGC TGTGGCTCCG ACACCTGCAG CCGCAAAGGA AAAAAAGAAT
ATCCTGTATA TCAATTCCTA CCACAACGGA TATTCATGGT CAGACCGTAT TCAGGAAGGG
ATAAAGGAAA CCATTCGTGA AAGTCCGTAT AAAATAGATC TGCAAATAGA ATATATGGAC
TCAAAAAAAT ATAATTATGC ATACATCAAA TTAATGCTGT ATGACATATA CTCTTATAAA
TTCGATCAAA AACACTTTGA CGCCATCATC GTCTCGGACA ACAATGCCTT CACTTTTATA
CGCCAATTCC ATGACGACCT TTTTCCTGGC GTACCAGTCA TTTTTTGTGG TATAAACAAC
CTTGAAAAAG AACAAATCCA AAGAAGAAAT CTCTATACTG GCCTTTTAGA AAATTTTGAC
TTTCAGCATA ATATTGAACT TGCCTTACGT CTACACCCAC AAAAAGACCG AGTGATTGTT
ATTGGCGACC AGTCGGTCAC CGGAAAAGCC ATCCGCAGCC AAATTCAAAA AGCAGCTTCC
AACCTTTCTG AACGCGTTGA ATTTGAATAT TGGTCAAACT ACACTCTTGA AAAAATAATT
TCTAATGTCC AGGATTTACC GAAAGATACA TTCATCTACT TTATTCCCAT ATATAAAAAC
ATCAGTGACC AATTCTACTC CGCTGAGGAG TTGTTGAGCG TCATCAATCA AAACACGAAT
GTACCCTGCT ACAGCGGTTG GGAATTCTTG CTGGGCAATG GAATCATCGG TGGCAAACTC
CTCAGTGGGT ATCGCCACGG AGAAATCGCA GCCAACATGG CCCTCCAGGT GTTGTCCGGC
ACCTCGCCCA ACAAAATCAG TATTATCGAG AAACCGCAAG ATAAGCTCTT ATTTGACTAC
AACGCACTAA AAAAATTCTA CATCCAAAAA TCACAACTCC CTGCGGACAG TACAGTAATC
AACGAACCCG ATCTGTTTTA TGAACTCAAC CAGCAGGTCT TTTGGACAAT TATCATCAGT
CTGATTTTAC TGAGCATCAC GCTCGTCTTA CTGGTGATCA ATATTATCCA GCGCAAATCT
GTAGAACAAA AGATCAAGGA CCAGCTCTCA TTTTTGCAGT TACTCATGGA TACCATTCCC
ATCCCCATCT ACTTCAAAAA CAAGGACGGG ACTTATGAGA ACTGCAACAC GTCCTTTGAG
AAATGGTTTT CTATCTCCCG CTCCCAGATT ACCGGTAAAA GTGACGACGA CCTTCAAGGG
AAAGGGTTGG TGCAGCTGTA CCAGGAAGTC GATGATTCGA TCCTGGAAAG TGCCGGAGTA
CGGACGTATG AAGACAGTAT CCTCAGCAGT AACGGTGAAA TCCACGATGT TATCTTGCAC
AAAGCCACCT ATAAAAATGC CAAAGGAGAA ATAGCTGGTT TTGTTGGCGT CCTCTTTGAT
ATCACCGATC GCAAAAAAGC AGAGGACAAT CTGCGCAAAG CTGAAGAAAA ATACCGCTCG
ATTTTCGAAA ATTCTCCTTT GGGCATCTTC CGGATCACTC CTCGGGGCAA ACTCTTGGAC
TGCAATCCAG CCTTGGCCCG AATGATGGGC TATGAGACCC CGTCCGCCCT GATGTTCGAA
ACCGACGAAT TCCCTCGGGC CTTGTTCGCT GACGAACGCC AGGAACGAGA AGTCCGGAAA
ATGCTCCAAC GCGGTTCAGG CATCGTCCAA TTTGAGCGGC AGTTCCGGCG GCGTGATGGA
CAGAATCTGA CCTTGAACAT CAACGTCCGC ATTATTCGCC ACAGTCTCGG AACCATCAAG
CATTTTGAGG GGTTTGCCGA GGACGTAACC CAGAAGGTCA ACCTGGAACG GCAGCTGCTG
CAGTCCCAGA AAATGGAAGC CATTGGGACC CTGGCCGGCG GAATCGCCCA CGACTTCAAC
AACATCCTCA CCTCGATCAT CAACTCTATC GAACTGGCGA GCATGGATGT CGACCCGGAT
TCCATGGCCG GCAATGACCT GGAACGGGCC CTGAAAGCGG CGCAACGCGG CAGCCATCTG
GTCAAACAGA TCCTGACCTT CAGCCGCCCT TCCCAGGACG GATTCATTTC CACCAATCTG
GCCCACGTCC TCCAGGAAGA CCTCAGTCTG ATCAAGGCCT CGTTGCCACG GAACATCGAG
ATCCGGGAAA ATATCCAGGC CAGGCATGAA ACCACCACAG CCGACCCCAC GCAGATCCAT
CAGATCGTGA TGAACCTGTG CACAAATGCC TTCCAGGCCC TGCGCGAACA CGGGGGCGTC
CTTGAAGTCA GTTTAAGCGA GGTGGCCCTG GACCAGAAAG AAGCCAAGGC GCTGCATATT
GCGTCCGGCA ACTACCTCTG TTTGGCCGTT TCCGACAACG GGCCGGGGAT TGATACCGAT
ATTTTGAACA AGATTTTCGA CCCCTTTTTC ACCACAAAGG GCAAAGGGGA AGGCACCGGA
CTTGGGTTGG CCGTGGTCCA CGGCATCGCC AAAAACCACA ATGGGGCTGT CCGCGTCAGC
AGCCTGCCCT GGGAAAAGAC CAGCTTTGAA ATTTTGCTGC CCATGCAGGA ACACGATGAT
GAACTGGATC AACCGCAAAC CGTGCCCTCG ATCAGGGGCG CGGAACGCAT CCTGTTTGTC
GAAGACGACG AGGACCAGAT CGCGACGATT CCCAGGGTCC TTGAACAACT CGGCTACCAG
GTCCAGGCCG AAAGCGACGT AACGAAGGCC CTGGACCGGT TCCGCGAAAC CCCGGACCAG
TTTGATGTGG TTATCACCGA TTTTGACATG CCCGAGGTCA ACGGGCTGGA ATTGGCCAAG
GAAATCAAGA CCATCGCCCC TACAACGCCG GTCATCCTCG TTTCCGGCCG CGAAACGGCC
ATCCAGGCCC TGGGACAGGT GGATAATATC TGCAAATTGG TGCGCAAGCC CTACAACCGC
TTGAGCCTTT CCCAGGCTAT TCGGGAAGCA ATGACCTATT TACAAAGGCC GCACCAATGA
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| Protein sequence | MTLHTFLSER LFSLILVLIL GISAGSAVAP TPAAAKEKKN ILYINSYHNG YSWSDRIQEG
IKETIRESPY KIDLQIEYMD SKKYNYAYIK LMLYDIYSYK FDQKHFDAII VSDNNAFTFI
RQFHDDLFPG VPVIFCGINN LEKEQIQRRN LYTGLLENFD FQHNIELALR LHPQKDRVIV
IGDQSVTGKA IRSQIQKAAS NLSERVEFEY WSNYTLEKII SNVQDLPKDT FIYFIPIYKN
ISDQFYSAEE LLSVINQNTN VPCYSGWEFL LGNGIIGGKL LSGYRHGEIA ANMALQVLSG
TSPNKISIIE KPQDKLLFDY NALKKFYIQK SQLPADSTVI NEPDLFYELN QQVFWTIIIS
LILLSITLVL LVINIIQRKS VEQKIKDQLS FLQLLMDTIP IPIYFKNKDG TYENCNTSFE
KWFSISRSQI TGKSDDDLQG KGLVQLYQEV DDSILESAGV RTYEDSILSS NGEIHDVILH
KATYKNAKGE IAGFVGVLFD ITDRKKAEDN LRKAEEKYRS IFENSPLGIF RITPRGKLLD
CNPALARMMG YETPSALMFE TDEFPRALFA DERQEREVRK MLQRGSGIVQ FERQFRRRDG
QNLTLNINVR IIRHSLGTIK HFEGFAEDVT QKVNLERQLL QSQKMEAIGT LAGGIAHDFN
NILTSIINSI ELASMDVDPD SMAGNDLERA LKAAQRGSHL VKQILTFSRP SQDGFISTNL
AHVLQEDLSL IKASLPRNIE IRENIQARHE TTTADPTQIH QIVMNLCTNA FQALREHGGV
LEVSLSEVAL DQKEAKALHI ASGNYLCLAV SDNGPGIDTD ILNKIFDPFF TTKGKGEGTG
LGLAVVHGIA KNHNGAVRVS SLPWEKTSFE ILLPMQEHDD ELDQPQTVPS IRGAERILFV
EDDEDQIATI PRVLEQLGYQ VQAESDVTKA LDRFRETPDQ FDVVITDFDM PEVNGLELAK
EIKTIAPTTP VILVSGRETA IQALGQVDNI CKLVRKPYNR LSLSQAIREA MTYLQRPHQ
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