Gene Dret_0730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0730 
Symbol 
ID8418543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand+ 
Start bp861759 
End bp862409 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content61% 
IMG OID645037294 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_003197600 
Protein GI258404858 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0124065 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACAGC GTCTATTAGC AACCGATCTG TATTGTTTGA CCGCTTCTGA TCTCTCCAGG 
GGGCGGGAGA CTGTGGAAGT CGTAGAGCAG ATGCTTGCGG CCGGCATCCG TCTGGTGCAG 
TACCGGGAGA AAAGCAAAAA GGCTGCTGCG CAGTACAGGG AATGTCAGCA GTTACGGAAG 
ATGACCCGAG ACGCTGGAGC CGCTTTCGTG GTCAACGACG ATGTCGCCCT GGCTCGGGCG 
GTCGGGGCTG ACGGAGTGCA TATCGGGCAA GAGGATCTGC CGGTCCCGGT TGTCCGGGAT 
CTCGTCGGGC CGGACATGGC CATCGGGGTT TCTACCCATG GACCGGACCA GGCCCTGGCT 
GCTGTGGCCG ACGGAGCGGA TTATATCGGA GTCGGTCCGC TCTTCGCGAC CCAAACCAAA 
AAGGATGTTT GTGCGCCGGT GGGGCTTGCA TATCTCGATT GGGTCGCGGC GCATATCGAT 
CTTCCCTTTG TGGCCATCGG GGGAATCAAG GAACACAATG TGGCAGAAGT CGTGCGCCAC 
GGGGCGCGTT GTGTGGCATT GGTGACCGAG ATCACCCAGG CAGAGGATAT TGCGGCGACA 
ATCGCCTCGG TGCGCCAAAC AATGGCAGCC GCCAAGGGGC AGCGCGGATG A
 
Protein sequence
MRQRLLATDL YCLTASDLSR GRETVEVVEQ MLAAGIRLVQ YREKSKKAAA QYRECQQLRK 
MTRDAGAAFV VNDDVALARA VGADGVHIGQ EDLPVPVVRD LVGPDMAIGV STHGPDQALA 
AVADGADYIG VGPLFATQTK KDVCAPVGLA YLDWVAAHID LPFVAIGGIK EHNVAEVVRH 
GARCVALVTE ITQAEDIAAT IASVRQTMAA AKGQRG