Gene Dret_0686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0686 
Symbol 
ID8418499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand+ 
Start bp816101 
End bp816712 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content58% 
IMG OID645037250 
Productphosphoheptose isomerase 
Protein accessionYP_003197556 
Protein GI258404814 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0279] Phosphoheptose isomerase 
TIGRFAM ID[TIGR00441] phosphoheptose isomerase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.111927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.369891 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAAA GCGCCCATGA CATAGTAGCT GATTACGCCC GCGAGGGGCT GGCGCTCAGG 
GAGCGTTTTT TTACCAGCAA CGCGGAAGCG ATCGCAGCGC TTGGATTGAA TATAGCCGTT 
TGTCTGGCCA AAGGCGGCAA AATTTTGTTG TGCGGCAATG GCGGAAGTGC GGCGGACGCG 
CAGCATCTGG CAGCAGAATT CGTCAACCGG TTCCAGATCG AGCGACCGCC GCTGCCCGCT 
ATTGCTTTGA CCACGGACAG TTCCATTCTC ACGGCCATCG GGAACGACAG CAGTTTTGAC 
GAGGTCTTTG TTAAGCAAGT CAAGGCCCTG GGTCGTCCTG GAGATGTCCT GCTCGGGATT 
TCCACGTCGG GCAAGAGTGC CAATGTCAAT GCGGCATTGG CCGCGGCCCG GGAAGGCCAA 
TTGGGCACGG TGGGCTTAGC GGGCAAGGAC GGCGGGGCGA TGGCCGATCT CTGCGACACC 
TTGTTGGTCG TGGATCACGA CAGCACGCCG CTGATTCAAG AAGTCCAGAT CGCCGTGGGC 
CATATGGTCT GCCGACTGGT GGACTACTAC CTGTTTGAGG CCGTGGTGGA ATTGCAGCCG 
TATCTCGAAT AA
 
Protein sequence
MTQSAHDIVA DYAREGLALR ERFFTSNAEA IAALGLNIAV CLAKGGKILL CGNGGSAADA 
QHLAAEFVNR FQIERPPLPA IALTTDSSIL TAIGNDSSFD EVFVKQVKAL GRPGDVLLGI 
STSGKSANVN AALAAAREGQ LGTVGLAGKD GGAMADLCDT LLVVDHDSTP LIQEVQIAVG 
HMVCRLVDYY LFEAVVELQP YLE