| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0569 |
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| Symbol | |
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| ID | 8418381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 692766 |
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| End bp | 694280 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645037137 |
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| Product | flagellar M-ring protein FliF |
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| Protein accession | YP_003197444 |
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| Protein GI | 258404702 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATG AAGCGCAGCA ATCGCAGACA GCCCCTTCTT CCTCGCCGTC CCTGATTCAA
CGCATCCAGG ATTGGCCACG TAGACGCAAA CTGAGTTTGC TGGTTGTGGG GCTGCTCTGT
GTGGCGGTTT TTACTTTTTT GATTCTCCAG GCGCGGGTGG CTGACTACCA GTTGCTTTAT
GCCGATATGA CGCAACAGGA AGCATCATCT GTTGTGGACT GGCTTCAGGA CAGCAATGTT
TCCTACCAAC TGCGCGATCA GGGGAGTTCA ATCTATGTCC CGGCCGGACA AGTTTATAAA
ACCCGTTTGG ATTTGGCGGG TGATGGCTTG CCCCAGGGCC AGGGGGTGGG GTTCGAAATC
TTTGACCAGC AGCGCTTTGG GGTGACTCAG TTCACACAGC AGGTGAATTA CCAGCGTGCT
TTGCAAGGAG AGTTGGCCCG TAGCGTAGCA ACTTTAACAT CGGTGCAAAG CGCCCGGGTC
CATTTAGTGT TGCCGGAAAG GCAATTTCTA CGGGAACAGC AGGAAAAAGC CAAAGCCTCA
GTGGTCGTCG AGTTCGCTCC AGGCCAGGGA CTAGATTCAA ATCAGATCAA GGGGATTATC
CGCTTGGTAT CCGGCAGTGT GGAGGGGATG GCGGCGAATA ATGTGACCGT GGTGGATTCT
CAGGGCAATG TCCTCTCTGG AGGAGAAGAG GAGGATAGTG GCTCCCCCAT CTCGCCGGAA
AAACTCGAAT ACAAGCAGGC AGTCGAGGGT CAGTACGAAC AAAGAGCTCA AGCGCTTCTT
GATCGGGTTT TCGGGCCCAA CAAGGCCCTT GTTCGAGTGA CCGCGGCTAT TGATTTTGTT
TCCAAGCATA CCACCGAGGA ACTTTACGAC CCAGACAGTA TCGTGCCGCG TAGTGAGAAG
ACCTCCGAAA GCAATTCTGG AACCACTGCG AGGGAAGAAA CGGAAGGGAA TGCCGGGGGG
CAGCGCTCCA GTGAGAGTAC GGAAACAGTG AATTATGAGA TAAGCCGGAC AGTGAACGAA
ATTACTAAAA CTATGGGGGG GGTAAAAAAT CTCTCTGTGG CCGTTTTGGT GGGCCAGCAA
TTCCTTCAAA ACAAGGGAAA TGGCGGGGCC GCCGAAGGAC ATAGTGTGGA GTCTTTGCAG
CGTTTAGTTT CCAGTGCCCT GGGGCTGCAG CCTGACCGAG GCGACAGTAT CGAAGTGGTG
GCCATGCCTG TTCAGGAACA GGCGGGGCTG TCCAGTGGCA CGAGTGCGAA TGCAGGGTTT
TCTCTGTACG ACTATCTCCC ATTCGTCAAA TACGGACTCA TCGCTCTGGG ATTTATTCTT
GCCTACTTTT TGTTAGTGCG GCCTGTTTTG CAAACCTTTC GCAGCGAAGT CACTGAGCAT
TATAAGACTG TGGATGAATT AGAAGGAGAA TATAGAGAGA AGGTCACTGA TCCCACAGAA
CAATTACGGC AGGAGATTAA CCATTCGGAG GTAACACCGG CACAAATCGT TAAGGCTTGG
CTCAAAGAGA ACTGA
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| Protein sequence | MANEAQQSQT APSSSPSLIQ RIQDWPRRRK LSLLVVGLLC VAVFTFLILQ ARVADYQLLY
ADMTQQEASS VVDWLQDSNV SYQLRDQGSS IYVPAGQVYK TRLDLAGDGL PQGQGVGFEI
FDQQRFGVTQ FTQQVNYQRA LQGELARSVA TLTSVQSARV HLVLPERQFL REQQEKAKAS
VVVEFAPGQG LDSNQIKGII RLVSGSVEGM AANNVTVVDS QGNVLSGGEE EDSGSPISPE
KLEYKQAVEG QYEQRAQALL DRVFGPNKAL VRVTAAIDFV SKHTTEELYD PDSIVPRSEK
TSESNSGTTA REETEGNAGG QRSSESTETV NYEISRTVNE ITKTMGGVKN LSVAVLVGQQ
FLQNKGNGGA AEGHSVESLQ RLVSSALGLQ PDRGDSIEVV AMPVQEQAGL SSGTSANAGF
SLYDYLPFVK YGLIALGFIL AYFLLVRPVL QTFRSEVTEH YKTVDELEGE YREKVTDPTE
QLRQEINHSE VTPAQIVKAW LKEN
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