| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0563 |
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| Symbol | |
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| ID | 8418375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 677567 |
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| End bp | 682687 |
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| Gene Length | 5121 bp |
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| Protein Length | 1706 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645037131 |
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| Product | type 1 secretion C-terminal target domain protein |
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| Protein accession | YP_003197438 |
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| Protein GI | 258404696 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAA ACACAATGAA CGTAGCGCAA ATGGAAGGGC AGATCGAGGA AGGGGGGCGC
GAGACATCGA ACGCCGCGGC CGAGAATCTT CAGACCTCGC AACAAACGCA ACAACCGATC
CCCGTCCCTG AAGCGGGAGA AACCCGTGTT GTTCAGGTCG CCCCAGGTGA TGTTATCCAA
CTCGGTGCTG ATGTCACCGA AGCTGAACTC ATTCAGCAGG GGGGAAGTGT CCTCCTCCGT
TTTTCAGATG GAGGAGACCT GCTTTTGGAA GATTTTATCA ATCAGACAGA CGCGGGCGAA
CCACCCACGT TGATTCTTGC TGACGGCTCT GAGGTAACCG CCGACCAGAT CATTGCTGCC
ATGACACCAG CACCTGATGC GGCTCCTGCT GCCGGAGAAG GGCCGACCAG CGGTGGAGCG
GGCGAATATA GAGAAGATGT TGGCAATCTC ATAGAAGGCG TAAACCGGTT GGACGGCCTC
GGACCGGATG CCTTGGCAGC CGATGCCGCT TTGGTCCCAG AGGCAGAAGG AGAGGGGATT
CTCCCCGAAG TGGAGGAAGA CGCCCTTCCT CTGGCCGCTG ATGACGCCTT TACTATTGAA
GAGGACCCGG AATCTCCTTT GGAAGGCGAT CTGAGCCTCA ACGACGATCC TGGTGATGCC
CCGGCGACAT TTGCCATTTT GGACGGCCCC GAAAACGGCA CGGCGACCGT CAATCCGGAC
GGGACCTTCT CCTACACTCC GAGCGACAAC TATAACGGTC CGGATTCGTT CACCTATACT
ATTACTGACA GCGATGGTGA TACGGATACA GCCACCGTGA CCATCGAGGT TACACCGGTC
AACGACGCTC CCCAGGCCCT GGACAACGAG TACAGCACCG ACGAAGACTC CAGCGTGGGT
GGCAATGTCA TCACCGACAC CGGATTTGAT GATGAGCTCA ATGTCACCGG CGTCGATTCC
GATCCGGAAA ACGACCCCCT CACCGTGACC GCGGTTAACG GCACCGCCAT TGAGTCTGGC
GACACCATCA CGCTCGCCAG CGGCGCCCTG TTGACCATGA ACAGCGACGG GACTTTCACC
TACAACCCCA ACGGGCAATT TGAGGGCCTT GGCGGCGAAG GCAGCGAGAA TTCCGCCGGT
TCAGACACCT TCACCTATAC CATTACCGAC GGCGACGCGA CTTCGACCGC TGACGTGACC
ATCAATGTCA GCGGCCTCAA CGACGCTCCC CAGGCCCTGG ATAACCAGTA CAGCACCAAC
GAAGACTCCA GCGTGGGTGG CAACGTCATC ACCGACACCG GATTTGATGA TGAGCTCAAC
ACCACCGGGG TCGACTCCGA TCCGGAAAAC GATCCCCTCA CTGTGACCGC GGTCAATGGC
ACCGCCATCA ACTCCGGCGA CACCATTACA CTCGCCAGCG GCGCCCTGTT GACCATGAAC
AGTGACGGGA CCTTCACCTA CGATCCCAAC GGGCAATTTG AGGGCCTTGG CGGCGAAGGC
AGCGAGAATT CCTCCGGTTC AGACACCTTC ACCTACACCA TCACTGACGG CGACGCGACC
TCGACCGCTG ACGTGACCAT CAATGTCAGC GGCGTCAACG ACGCTCCCCA GGCCCTGGAC
AACGAGTACA ACACCAACGA AGACTCCAGC GTAGGTGGCA ATGTCATCAC CGACTCCGGA
TTTGATGATG AGCTCAATGT CACCGGGGTC GACTCCGATC CGGAAAACGA TCCCCTCACT
GTGACCGCGG TCAACGGCAC CGCCATTGAG TCTGGCGACA CCATCACACT CGCCAGCGGC
GCCCTGTTGA CTATGAACAG TGACGGGACC TTCACCTACG ATCCCAACGG GCAATTTGAG
GGCCTTGGCG GCGAAGGCAG CGAGAATTCC TCCGGTTCAG ACACCTTCAC CTACACCATC
ACTGACGGCG ACGCGACCTC GACCGCTGAC GTGACCATCA ATGTCAGCGG CGTCAACGAC
GGTCCCCAGG CCCTGGATAA CCAGTACAGC ACCGACGAAG ACTCCAGCGT GGACGGCAAT
GTCATCACCG ACATCGGAGT TGATGATGAG CTCAACACCA CCGGGGTCGA TTCTGATCCG
GAAAACGACC CCCTCACTGT GACCGCGGTC AACGGCACCG CCATTGAGTC TGGCGACACC
ATTACACTCG CCAGCGGCGC CCTGTTGACC ATGAACAGTG ACGGGACCTT CACCTACAAT
CCCAACGGAC AGTTCGAAGG CCTTGGCGGT GAAGGCAGCG AGAATTCCTC CGGTTCAGAC
ACCTTCACCT ACACCATCAC TGACGGCGAC GCGACCTCGA CCGCTGACGT GACCATCAAT
GTCAGCGGCG TCAACGACGC TCCCCAGGCC CTGGACAACG AGTACAGCAC CGACGAAGAC
TCCAGCGTAG GTGGCAATGT CATCACCGAC ACCGGATTTG ATGATGAGCT CAATGTCACC
GGCGTCGATT CCGATCCGGA AAACGACCCC CTCACCGTGA CCGCGGTCAA CGGCACCGCC
ATTGAGTCTG GCGACACCAT CACGCTCGCC AGCGGCGCCC TGTTGACCAT GAACAGCGAC
GGGACCTTCA CCTACGATCC CAACGGACAG TTCGAAGGCC TTGGCGGCGA AGGCAGCGAG
AATTCCGCCG GTTCAGACAC CTTCACCTAT ACCATTACCG ACGGCAACGC GACCTCGACC
GCTGACGTCA CCATCAATGT CAGCGGCGTC AATGATCCGC CTATTGCAGT AGACGATGTA
CCTTGTCCTG AGTCGGAAGA CTTCACCGCC AGCTTGTTTT TAAACGAAGG TCAAAACGGC
TCCAGTGCTT CAAATTGGTC AATGACAAAT CTGTCTATTA TTGCCTACGA ATTCAACGGA
GATAACGAGT CGGACACTTT AGCATACACC CAACAAGGAG TTGGTGTCCT GAGTGATGGG
GAAAACAACC CTCCTAATAG ATTCAATGAA CTGGATTATA ACAGAGGTGA AGACAAATCG
GAATCGCTAC AAATAAAATT CGATGGCTTT GTCAACACCT CGACTGTTAC ATTAGGCATG
TTTTTTGAAA ATGAAGGCCC CAATAATGGT GAAGAAATAG GGCATTGGCA GGCATTATTG
AACGGACATG TGATTGCTGA ATCTGACTTT GACTCCACAA ATGACTCATC TGGCACAAAA
TCCATTACTA TAGACACCGG CGACAAGCTA TACAACGAGC TTATTTTCAC AGCTAAAGAA
TATAGTGAAG GAGGGGGAAA TCTTGGTGTC AATTCAGACA GCTCTGATTA CTACATTAAA
TCCATTTATT CCTCCGGCCC ATGTGACTGT AATGGCCCCT TAGCCACAAC CGAAGACGCT
CCGACTTCAT CTTTAACTAC ACACATTCTT TCCAACGACT CTGATCCTGA AAATAATACG
CTTTTTATCA CTAACATCGA TACCAATCTA ACGAACGGCA AGGTTTCCTT CGATGTCGAC
ACCGAAGGAA ATATAACCAA TGTCGTCTAT GATCCTGATA ATTATTACAA CTACTTAAAT
CCTGGCGAAA CTGCAACTGA CACATTTTCA TACACTATCA GCGACGGATA TGGGGGCACT
GACACAGCGC AGGTTACAAT CAAGATCATT GGTATCAACG ACTACCCCTC AGCTGAAAAC
GATATGCAAT CTCTCAACTA TGGCCACCTC CTTGCTACAA ACAATACAGG GGCTACGATA
CTCTCCTCAG TCAATCTAGA CCCTGATGCA GAGACAACAT ATACAGCTAT AAACGAGGAC
ATAGGCATCA AACCCGATGA AATGGCCTAT GATGGATCTG GATTACTTTG GGCTTTCGAC
AATTCCAGCA AAAACTTTTA CACCATCAAC CCGTCTAATG GCGATATAAA ATTCCAATAC
GAAGGAGTCA TACAATCTGA TGTCGACGGC ATATCTTTCC TTACTATAAA TGGCTCCGAG
TATATGTTTG TTCTTGCAGG AAAAGATCTG TACACTCTCA ATCCTGACAA TGGCAACACG
ATAATTCCAG AAAGCTACTC CATAGAAGGA GCTTCTAGTA ATCTTGCAGA CTTAGTTTCT
CTCAACGGTA AATTATACAC CTATGCTTCT AATAACAATC TTTTTGAAAT ATCGCTTAAT
CCAGACGGAA GTGTTGATTC AGTAAACACC TTTTCTTTAC CGAGTACTAT ATCCAGAGTC
GACGGAATGG TTGGCGGTGA CGACGGTAGC CTATACCTTG TTTCCTCAAA AGGTCAGAGT
GGTGGGACAG TGACCCCTCT AACCATAGAT AATGATGGAA ATATCACCAT TGAAAGTCCT
TTCGATATAG ATGGGGCGCC ACTTGGCAAT CTCTGGGCCA TGGCTGGGAT GATAAATTTC
AACACAGAAG TTAATGGAAA CGTTTTAGAC AACGACACCG ATCCGGAAAA CTCATTGTTG
GAAGTCACTC TGGTAGACGG CCAAAGCGCG AACGTCGGTA CCACTGTTGA TGGTGACTTC
GGCTCGTTGA CCCTGAACAG CGACGGGACG TACACCTACA CACTGGACAC GGATATAACC
GCAGCCGGCC AGGACAGCTT CACGTATACC ATTTCTGACG GATACGGAGG ACTTTCCAGT
GCCACGCTGA CCTTCAACGT CAACGGTTTT ATCCCAACTG GTTCCGGCTC GGTAATCACC
GGGGACGAAA ACGACAACAT CCTTACCGGC ACAGTGAACA ATGACATCCT GTTTGGAGAT
GAAGGAAACG ACAGCCTCAC CGGCGACGAT GGCGCTGACA CCTTTGTCTA CAGTGCTGAT
GGCGGCGAGG GTCAGGACAC GATCCTCGAT TTCAATCCTG GAGAGGATAT CATCCGCCTG
ACCGATGTCC TGGATAGCGA TACGGACGGA CTGCCGGATC TCAATGAACT GGCTGGATCA
GCGCAAGAAG TAAGTGTTGC GGTCAATGGC AGTGATGTCA CCCTGACCAT CGCGGGAACA
AATGGCAACA TGGACAGCAC CGTCACCCTG GACGGGATCA ACTCGGGAGC CTACGACTCG
TACGACGGCG GAACGCTCCA GGACCTCATC GACAACGACC TGATCAAGGT CCAATACGAA
TCCGGTTCTT TTGACAGCTA A
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| Protein sequence | MAENTMNVAQ MEGQIEEGGR ETSNAAAENL QTSQQTQQPI PVPEAGETRV VQVAPGDVIQ
LGADVTEAEL IQQGGSVLLR FSDGGDLLLE DFINQTDAGE PPTLILADGS EVTADQIIAA
MTPAPDAAPA AGEGPTSGGA GEYREDVGNL IEGVNRLDGL GPDALAADAA LVPEAEGEGI
LPEVEEDALP LAADDAFTIE EDPESPLEGD LSLNDDPGDA PATFAILDGP ENGTATVNPD
GTFSYTPSDN YNGPDSFTYT ITDSDGDTDT ATVTIEVTPV NDAPQALDNE YSTDEDSSVG
GNVITDTGFD DELNVTGVDS DPENDPLTVT AVNGTAIESG DTITLASGAL LTMNSDGTFT
YNPNGQFEGL GGEGSENSAG SDTFTYTITD GDATSTADVT INVSGLNDAP QALDNQYSTN
EDSSVGGNVI TDTGFDDELN TTGVDSDPEN DPLTVTAVNG TAINSGDTIT LASGALLTMN
SDGTFTYDPN GQFEGLGGEG SENSSGSDTF TYTITDGDAT STADVTINVS GVNDAPQALD
NEYNTNEDSS VGGNVITDSG FDDELNVTGV DSDPENDPLT VTAVNGTAIE SGDTITLASG
ALLTMNSDGT FTYDPNGQFE GLGGEGSENS SGSDTFTYTI TDGDATSTAD VTINVSGVND
GPQALDNQYS TDEDSSVDGN VITDIGVDDE LNTTGVDSDP ENDPLTVTAV NGTAIESGDT
ITLASGALLT MNSDGTFTYN PNGQFEGLGG EGSENSSGSD TFTYTITDGD ATSTADVTIN
VSGVNDAPQA LDNEYSTDED SSVGGNVITD TGFDDELNVT GVDSDPENDP LTVTAVNGTA
IESGDTITLA SGALLTMNSD GTFTYDPNGQ FEGLGGEGSE NSAGSDTFTY TITDGNATST
ADVTINVSGV NDPPIAVDDV PCPESEDFTA SLFLNEGQNG SSASNWSMTN LSIIAYEFNG
DNESDTLAYT QQGVGVLSDG ENNPPNRFNE LDYNRGEDKS ESLQIKFDGF VNTSTVTLGM
FFENEGPNNG EEIGHWQALL NGHVIAESDF DSTNDSSGTK SITIDTGDKL YNELIFTAKE
YSEGGGNLGV NSDSSDYYIK SIYSSGPCDC NGPLATTEDA PTSSLTTHIL SNDSDPENNT
LFITNIDTNL TNGKVSFDVD TEGNITNVVY DPDNYYNYLN PGETATDTFS YTISDGYGGT
DTAQVTIKII GINDYPSAEN DMQSLNYGHL LATNNTGATI LSSVNLDPDA ETTYTAINED
IGIKPDEMAY DGSGLLWAFD NSSKNFYTIN PSNGDIKFQY EGVIQSDVDG ISFLTINGSE
YMFVLAGKDL YTLNPDNGNT IIPESYSIEG ASSNLADLVS LNGKLYTYAS NNNLFEISLN
PDGSVDSVNT FSLPSTISRV DGMVGGDDGS LYLVSSKGQS GGTVTPLTID NDGNITIESP
FDIDGAPLGN LWAMAGMINF NTEVNGNVLD NDTDPENSLL EVTLVDGQSA NVGTTVDGDF
GSLTLNSDGT YTYTLDTDIT AAGQDSFTYT ISDGYGGLSS ATLTFNVNGF IPTGSGSVIT
GDENDNILTG TVNNDILFGD EGNDSLTGDD GADTFVYSAD GGEGQDTILD FNPGEDIIRL
TDVLDSDTDG LPDLNELAGS AQEVSVAVNG SDVTLTIAGT NGNMDSTVTL DGINSGAYDS
YDGGTLQDLI DNDLIKVQYE SGSFDS
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