Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0509 |
Symbol | |
ID | 8418316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 617036 |
End bp | 619222 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645037072 |
Product | helicase, RecD/TraA family |
Protein accession | YP_003197384 |
Protein GI | 258404642 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.156779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCTA CCACCCTCCA GGCTGAAATC GTCAGTATCG TCTTCCACAA TCCGGAAAAT GACTATGTTG TGGCCAGGGC CCGGGCTGAA GGGGAACCCG GTCAATCGAC CGTGGTAGGA ATCATGCCCC AGGTCATGCC CGGGGAGCAG GTGCGCCTGG AAGGGGAGTG GCGGGAGCAC CCCAAATTCG GCCGTCAATT CCATGCGGTG TCCCATACCC GGGAGTTGCC GGCCACCATC AACGGGATCA GACGCTATCT CGCCTCGGGG CGGATCAAGG GAGTCGGCCC GGTGATGGCC GAACGGCTGG TCCAGTTTTT CGGCAAAGAC GTGCTGGATA TCCTGGACAA CGCCCCGGAG CGCCTTTTGG AGGTCGAGGG GCTGGGAAAG AAGACGCTGG AGGGAATCAA GGCCTCGTGG GATCAACAGC GCGAAGTGCG TAACGTCATG CTGTTTTTGC AAAGCCATGA TGTGCCCCCG ACCTATGCCG GGCGTATTTT CGCCCGCTAC GGCAATCAGG CCGTGGAGAA ATTGCAGCAA AATCCCTACG AACTGGCCTA CGAAATCCGG GGCATCGGTT TCAAGACCGC GGACACCATG GCCTTGAAAC TCGGTTTTCA GGAGGACAGC CCCGAACGCC TGGAGGCCGG TCTGGTCTAC ACCCTGTTCC AGTTCGCTGA GCAGGGGCAT ATGTTCTACC CCGGCGATGA ACTCGTGCAC AAGGTGACCG AGACCCTGGG GGTCGGCGAT ACCGGCAAGG TCGACGGTGC GCTGGCCAGA CTGGAGGAGC GAAAGCGGGT TGTCGTAGAG GATCTGCCGG AACAGGCGGT CCTTCGGGCT GTTTTTCTTC GTCATTTCCA CAATTGGGAG GCCGAGATCG CTTCCCGGCT CACCGCTTTG GTCTCCCATC CGGCACCGGT CAACGAAGGA AAATTGGATT CTATTTTACC GGGGCTGGAG CAGAAAATCG GCGTGGCCTT GTCCTCTGAA CAAAAGGAAG CCGTTTTCGA GGCGTGTGCC AACAAGACGT TTATTTTGAC CGGCGGCCCG GGAACCGGGA AGACGACCAT CACCCAGGCC GTGGTCCGCG GGTTGGGGAA ACTGGGGTAC AAGATCAAGC TTGCAGCCCC CACGGGACGA GCGGCCAAAC GGCTTTCAGA GGCGACCGGT GCCTCGGCGA GCACGCTGCA CCGCCTGCTC GGATTTTCCC CGGACGGCGC CTTCGCCTAC AACGAGGAAA AGAAGCTTAA AGTCGACGCG CTGGTGGTCG ATGAGGCCTC CATGCTGGAC TGCCAGCTGT GCGTTCACCT GTTGCGCGCC CTGCCGTTGA CGTGCCGGTT GATCCTGGTC GGCGATGTGC ACCAACTGCC CTCCGTCGGG GCCGGCAACA TCCTGGAAGA CCTGCTCGAG AGCCGCGCCG TGCCCAGTCG CCATCTGACC CACATTTTCC GGCAGGCCCA GGAAAGCCTG ATCGTGGTCA ACGCCCACCG TTTTAACGAA GGCTTATTTC CCACGACCTC AGCCAAGGAG CCCCCGGAGG CCGATTTTTT CTGGGTCGAA CAGGATGACC CGGCCCGGGT TCAGGAAATC ATCAGGCAAC TGGTCTGCGA GCGGATTCCG GCAATTTACG GCCTTGATCC CCTGCGCGAC GTCCAGGTGT TGAGCCCGAT GCACAAAGGG GAAGTCGGCA CCCAGCAGCT CAACACGCTT TTGCAGCAGG AACTCAATCC CTCAGGGCCG ACCCTGACGC GGGGCAACCG GATGTTTCGC CAGGGAGATC GGGTCCTGCA GACCCGCAAT AACTATGAAA AAGATGTCTT TAATGGAGAT CTGGGCTGGA TTACGGCGAT TAACGCCGAC TCGCAGACCA TGCAGATCGA TTTCGAGGGC CGTGATCTGA CCTATGAACA GGGCGAACTT GATGAACTCA CCTTGGCTTA CGCCGTCAGT GTGCATAAAT CCCAGGGCAG TGAATATCCG GCCGTTGTCC TGCCGGTCGT GACCCAGCAC TTCATGCTTT TGCAGCGCAA TCTGATCTAT ACCGCCCTGA CCCGGGCCAA GTCTCTGGCT GTGCTTGTTG GCAGCAGTAA GGCCCTGGGC ATCGCCCTGA ACCACAAACG GGGCGCAGAG CGCTATACCC ACCTCCGTTA CCGGCTCCAA GACGCGGCCA ACGACATTCC CTATTGA
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Protein sequence | MSATTLQAEI VSIVFHNPEN DYVVARARAE GEPGQSTVVG IMPQVMPGEQ VRLEGEWREH PKFGRQFHAV SHTRELPATI NGIRRYLASG RIKGVGPVMA ERLVQFFGKD VLDILDNAPE RLLEVEGLGK KTLEGIKASW DQQREVRNVM LFLQSHDVPP TYAGRIFARY GNQAVEKLQQ NPYELAYEIR GIGFKTADTM ALKLGFQEDS PERLEAGLVY TLFQFAEQGH MFYPGDELVH KVTETLGVGD TGKVDGALAR LEERKRVVVE DLPEQAVLRA VFLRHFHNWE AEIASRLTAL VSHPAPVNEG KLDSILPGLE QKIGVALSSE QKEAVFEACA NKTFILTGGP GTGKTTITQA VVRGLGKLGY KIKLAAPTGR AAKRLSEATG ASASTLHRLL GFSPDGAFAY NEEKKLKVDA LVVDEASMLD CQLCVHLLRA LPLTCRLILV GDVHQLPSVG AGNILEDLLE SRAVPSRHLT HIFRQAQESL IVVNAHRFNE GLFPTTSAKE PPEADFFWVE QDDPARVQEI IRQLVCERIP AIYGLDPLRD VQVLSPMHKG EVGTQQLNTL LQQELNPSGP TLTRGNRMFR QGDRVLQTRN NYEKDVFNGD LGWITAINAD SQTMQIDFEG RDLTYEQGEL DELTLAYAVS VHKSQGSEYP AVVLPVVTQH FMLLQRNLIY TALTRAKSLA VLVGSSKALG IALNHKRGAE RYTHLRYRLQ DAANDIPY
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