Gene Dret_0509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0509 
Symbol 
ID8418316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp617036 
End bp619222 
Gene Length2187 bp 
Protein Length728 aa 
Translation table11 
GC content60% 
IMG OID645037072 
Producthelicase, RecD/TraA family 
Protein accessionYP_003197384 
Protein GI258404642 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.156779 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCTA CCACCCTCCA GGCTGAAATC GTCAGTATCG TCTTCCACAA TCCGGAAAAT 
GACTATGTTG TGGCCAGGGC CCGGGCTGAA GGGGAACCCG GTCAATCGAC CGTGGTAGGA
ATCATGCCCC AGGTCATGCC CGGGGAGCAG GTGCGCCTGG AAGGGGAGTG GCGGGAGCAC
CCCAAATTCG GCCGTCAATT CCATGCGGTG TCCCATACCC GGGAGTTGCC GGCCACCATC
AACGGGATCA GACGCTATCT CGCCTCGGGG CGGATCAAGG GAGTCGGCCC GGTGATGGCC
GAACGGCTGG TCCAGTTTTT CGGCAAAGAC GTGCTGGATA TCCTGGACAA CGCCCCGGAG
CGCCTTTTGG AGGTCGAGGG GCTGGGAAAG AAGACGCTGG AGGGAATCAA GGCCTCGTGG
GATCAACAGC GCGAAGTGCG TAACGTCATG CTGTTTTTGC AAAGCCATGA TGTGCCCCCG
ACCTATGCCG GGCGTATTTT CGCCCGCTAC GGCAATCAGG CCGTGGAGAA ATTGCAGCAA
AATCCCTACG AACTGGCCTA CGAAATCCGG GGCATCGGTT TCAAGACCGC GGACACCATG
GCCTTGAAAC TCGGTTTTCA GGAGGACAGC CCCGAACGCC TGGAGGCCGG TCTGGTCTAC
ACCCTGTTCC AGTTCGCTGA GCAGGGGCAT ATGTTCTACC CCGGCGATGA ACTCGTGCAC
AAGGTGACCG AGACCCTGGG GGTCGGCGAT ACCGGCAAGG TCGACGGTGC GCTGGCCAGA
CTGGAGGAGC GAAAGCGGGT TGTCGTAGAG GATCTGCCGG AACAGGCGGT CCTTCGGGCT
GTTTTTCTTC GTCATTTCCA CAATTGGGAG GCCGAGATCG CTTCCCGGCT CACCGCTTTG
GTCTCCCATC CGGCACCGGT CAACGAAGGA AAATTGGATT CTATTTTACC GGGGCTGGAG
CAGAAAATCG GCGTGGCCTT GTCCTCTGAA CAAAAGGAAG CCGTTTTCGA GGCGTGTGCC
AACAAGACGT TTATTTTGAC CGGCGGCCCG GGAACCGGGA AGACGACCAT CACCCAGGCC
GTGGTCCGCG GGTTGGGGAA ACTGGGGTAC AAGATCAAGC TTGCAGCCCC CACGGGACGA
GCGGCCAAAC GGCTTTCAGA GGCGACCGGT GCCTCGGCGA GCACGCTGCA CCGCCTGCTC
GGATTTTCCC CGGACGGCGC CTTCGCCTAC AACGAGGAAA AGAAGCTTAA AGTCGACGCG
CTGGTGGTCG ATGAGGCCTC CATGCTGGAC TGCCAGCTGT GCGTTCACCT GTTGCGCGCC
CTGCCGTTGA CGTGCCGGTT GATCCTGGTC GGCGATGTGC ACCAACTGCC CTCCGTCGGG
GCCGGCAACA TCCTGGAAGA CCTGCTCGAG AGCCGCGCCG TGCCCAGTCG CCATCTGACC
CACATTTTCC GGCAGGCCCA GGAAAGCCTG ATCGTGGTCA ACGCCCACCG TTTTAACGAA
GGCTTATTTC CCACGACCTC AGCCAAGGAG CCCCCGGAGG CCGATTTTTT CTGGGTCGAA
CAGGATGACC CGGCCCGGGT TCAGGAAATC ATCAGGCAAC TGGTCTGCGA GCGGATTCCG
GCAATTTACG GCCTTGATCC CCTGCGCGAC GTCCAGGTGT TGAGCCCGAT GCACAAAGGG
GAAGTCGGCA CCCAGCAGCT CAACACGCTT TTGCAGCAGG AACTCAATCC CTCAGGGCCG
ACCCTGACGC GGGGCAACCG GATGTTTCGC CAGGGAGATC GGGTCCTGCA GACCCGCAAT
AACTATGAAA AAGATGTCTT TAATGGAGAT CTGGGCTGGA TTACGGCGAT TAACGCCGAC
TCGCAGACCA TGCAGATCGA TTTCGAGGGC CGTGATCTGA CCTATGAACA GGGCGAACTT
GATGAACTCA CCTTGGCTTA CGCCGTCAGT GTGCATAAAT CCCAGGGCAG TGAATATCCG
GCCGTTGTCC TGCCGGTCGT GACCCAGCAC TTCATGCTTT TGCAGCGCAA TCTGATCTAT
ACCGCCCTGA CCCGGGCCAA GTCTCTGGCT GTGCTTGTTG GCAGCAGTAA GGCCCTGGGC
ATCGCCCTGA ACCACAAACG GGGCGCAGAG CGCTATACCC ACCTCCGTTA CCGGCTCCAA
GACGCGGCCA ACGACATTCC CTATTGA
 
Protein sequence
MSATTLQAEI VSIVFHNPEN DYVVARARAE GEPGQSTVVG IMPQVMPGEQ VRLEGEWREH 
PKFGRQFHAV SHTRELPATI NGIRRYLASG RIKGVGPVMA ERLVQFFGKD VLDILDNAPE
RLLEVEGLGK KTLEGIKASW DQQREVRNVM LFLQSHDVPP TYAGRIFARY GNQAVEKLQQ
NPYELAYEIR GIGFKTADTM ALKLGFQEDS PERLEAGLVY TLFQFAEQGH MFYPGDELVH
KVTETLGVGD TGKVDGALAR LEERKRVVVE DLPEQAVLRA VFLRHFHNWE AEIASRLTAL
VSHPAPVNEG KLDSILPGLE QKIGVALSSE QKEAVFEACA NKTFILTGGP GTGKTTITQA
VVRGLGKLGY KIKLAAPTGR AAKRLSEATG ASASTLHRLL GFSPDGAFAY NEEKKLKVDA
LVVDEASMLD CQLCVHLLRA LPLTCRLILV GDVHQLPSVG AGNILEDLLE SRAVPSRHLT
HIFRQAQESL IVVNAHRFNE GLFPTTSAKE PPEADFFWVE QDDPARVQEI IRQLVCERIP
AIYGLDPLRD VQVLSPMHKG EVGTQQLNTL LQQELNPSGP TLTRGNRMFR QGDRVLQTRN
NYEKDVFNGD LGWITAINAD SQTMQIDFEG RDLTYEQGEL DELTLAYAVS VHKSQGSEYP
AVVLPVVTQH FMLLQRNLIY TALTRAKSLA VLVGSSKALG IALNHKRGAE RYTHLRYRLQ
DAANDIPY