| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0478 |
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| Symbol | |
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| ID | 8418284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 583182 |
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| End bp | 584063 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645037040 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003197353 |
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| Protein GI | 258404611 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.238477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTGGCAAC GGCCTGCCAA ATGGACCTGG TTTGACACCT TGTTTCTGGC TGTTGTCGTG
GGCGGCGGTT CCTGGCTGTT ACACAACGCC GCCACGGAAC TGGCCTATAA ATGGCAGTGG
GAGGTCATTC CCCAATATCT GGTCCGCTAT GATGAGCAGG CCGGGCATTG GGTTCCCAAT
CTTTTGCTAC AGGGGCTTTT GACCACCATT CGGCTGAGCT TTTGGAGTAC GTTGCTGGCG
ACGTGCATTG GCGTGGTCAT GGGGCTGTTT CGCGTCAGCC CGAGCCTGTT CAAACGGCTC
ATCGCCCAGA GCTATGTCGT GCTCAGCCGG AATCTGCCCC CGTTGGTCCT GGTCTTTCTG
CTCTATTATT TTTTCAGCGA TCAATTGTTG CCCAGCCTTG GATTGCAGGA GATGGTGGGG
CGGTTCCCCC CTCTGGCCCA AAAGATCATC GCTCTCGTTT TTGCCGAACC CGCGCAACTC
ATGACCACGA TTTCCGCCGT GGTCACCCTG GCCCTGTATG AGGGGGCCTA TATCACCGAA
ATCGTCCGTT CCGGGATCCA ATCCATTGAG CGTGGTCAGT GGGAAGCGGC GTACGCCCTG
GGGTTGTCCA AGTTCGAACA ACTCCGGTAT GTTATCCTGC CCCAGGCCGT GCGGCGTGTG
ATCCCGCCCC TGACCGGACA GTTTATTTCT ACGATCAAGG ATTCCGCAAT TGTTTCTGTT
ATTTCTGTAC CGGAGTTGAC TTTTCAAGGC ATGGAACTCA TGGCGGCTAC CTATTTGACC
TTTGAGGTCT GGATTACCGT CACGGTTCTG TATTTTCTGC TGACCTTCAG CTGTTCGCTT
CTAGCCAGGC GGATAGAAGT TTTCCTTCAA AAACGGGATT AG
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| Protein sequence | MWQRPAKWTW FDTLFLAVVV GGGSWLLHNA ATELAYKWQW EVIPQYLVRY DEQAGHWVPN
LLLQGLLTTI RLSFWSTLLA TCIGVVMGLF RVSPSLFKRL IAQSYVVLSR NLPPLVLVFL
LYYFFSDQLL PSLGLQEMVG RFPPLAQKII ALVFAEPAQL MTTISAVVTL ALYEGAYITE
IVRSGIQSIE RGQWEAAYAL GLSKFEQLRY VILPQAVRRV IPPLTGQFIS TIKDSAIVSV
ISVPELTFQG MELMAATYLT FEVWITVTVL YFLLTFSCSL LARRIEVFLQ KRD
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