Gene Dret_0468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0468 
Symbol 
ID8418274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp573064 
End bp574854 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content58% 
IMG OID645037030 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003197343 
Protein GI258404601 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGTTGC GTACCAAATT GTTGAGCGTT TTGTTGGGGC TGCTGTTCCT GGCCTCATTT 
GTGCCGCTTT TTTTGTCCAA GCAGGTTCTG CATGAGGAAC TGCTGGCCGC AGCCAAGCGG
GAGGCAGTAC TCAAGCTTGG GCACATGCAG TGGCTCATGC GCAAGGGCTT GGCACAGGAA
GGCCCGGCGG GTTTGAACGA GCAGTTTCGC CAGATCGGGA AACAGCTTGA TGTCCGGATT
ACCTATATCC GCCAGGACGG GACGGTTCTC GCCGATTCCT CGCTGCCCCT GCGCAAAGTG
CGCCAACTGG AAAATCACAA GCAAAGACCG GAAGTCCAGG AGGCGATGCA GCGCCGTTTC
GGTTCTAGTC TGCGCTACAG CGAGACCTTG AAAACCGATT TGCTTTATGT GGCCCGCACC
ATGGAGGCCA CATCGGAAAT CCCGGAAGGT TTCATCCGCA TGGCCGTGCA TCTCAGCGCT
GTGGACAAAC GTCTGGACGG CCTGTTCCAG CAGTACCTGA TCCTCTTCGT TATTGGGCTG
GCAGTGTGCG CGGTGGTGAG TTTCTGGCTC GCTTCCCGCG TGAGCCGGGC CATGCTGCGC
ATGGGGCAGA CCGCCGATGC CATCGGCAAT GGGGAATACG ACAAGCGGAT TGCATTCACT
CCGGCACGGG AATTTTTACC CCTGGCTCAG GCCATCAACC GCATGGCCCG GCGCATTCAG
AGCCATATTA CGACCATCAG CGATCAGAAC CGGCAGTTCG AATCCATTTT GAATGGCATG
CACGAAGGGG TCATGGTCCT TGACCGTCAA GGCAAGGTGA GCATGGTCAA TACCGAACTC
AAGAATATTC TCGAGGTCAC CTCTCCGGTG GGAAGGGCCC CGATTGAGCT CATCCGCAGT
CCGGAACTGC AAGGCGCCTG CGAGGCAATG GTCGCTGCAA CGGTGGGTAA GCAGAGCATG
GAGCCCGCCC AATTGCAGGT CGAAACAATG CAGGAGCGGA TTTACGATGT GAATCTGTTG
CCCTTGCCAG CAGAAAGCCA GGACATCAGC GCCATCGTGG TCTTCCACGA TATCACCGAA
CTCAAACGGC TCGAGCGGGT GCGCCGGGAT TTCGTGGCCA ATGTCTCGCA TGAGCTCAGA
ACGCCGTTGA CCTCGATCAA AGGGTATGCC GAGACACTGC TTGATATGGG GCAGGTGGAG
ACCGAAGCCG TCCACGCCTA TATGCAGGTC GTGGTCAAAA ATGCCAACGC CATGTCCCGC
TTACTGGAAG ATCTGCTCCA GCTCTCGAAA TTGGAGTCCA ACGCTGGCGA CAGGGAACTC
GGCCCGGTGT TGCTGACCAA CGCCATCCAG GCGGCGTGGA AATATTGTCA ACCCATGGCC
GAGGAACACC ATGTCTCACT CAACCAGAGT CAGATCCCGG CCGGGGTGTG CGTGTGGTCC
GAATACGACC CCTTGGTCCA GGTGCTACGC AATCTGTTTG AAAATGCGAT CAAATTCAGC
CCGGAAAATA CTGAGGTCCG CATAGAAGCG GAGCAGGACG GCCCGATATG GCAGATAAGC
GTTGTGGACA GCGGTCCAGG GGTCGGGCAA CGGGAACAGG AGCGGATTTT TGAGCGGTTC
TACCGCGTCC AGCACGGCTC CAAGCAGGTC GCCGGGACGG GATTGGGACT GGCCATCGCC
CGGCATATCG TGCGCAATCA CGTTGGACGA ATCTGGGTCG AAAGCCCCGT CCCCGGTCAA
ATAGAAGGGT CAGCATTTCG CTTTACACTG CGGGAATGCT CTTCTGCGTA A
 
Protein sequence
MSLRTKLLSV LLGLLFLASF VPLFLSKQVL HEELLAAAKR EAVLKLGHMQ WLMRKGLAQE 
GPAGLNEQFR QIGKQLDVRI TYIRQDGTVL ADSSLPLRKV RQLENHKQRP EVQEAMQRRF
GSSLRYSETL KTDLLYVART MEATSEIPEG FIRMAVHLSA VDKRLDGLFQ QYLILFVIGL
AVCAVVSFWL ASRVSRAMLR MGQTADAIGN GEYDKRIAFT PAREFLPLAQ AINRMARRIQ
SHITTISDQN RQFESILNGM HEGVMVLDRQ GKVSMVNTEL KNILEVTSPV GRAPIELIRS
PELQGACEAM VAATVGKQSM EPAQLQVETM QERIYDVNLL PLPAESQDIS AIVVFHDITE
LKRLERVRRD FVANVSHELR TPLTSIKGYA ETLLDMGQVE TEAVHAYMQV VVKNANAMSR
LLEDLLQLSK LESNAGDREL GPVLLTNAIQ AAWKYCQPMA EEHHVSLNQS QIPAGVCVWS
EYDPLVQVLR NLFENAIKFS PENTEVRIEA EQDGPIWQIS VVDSGPGVGQ REQERIFERF
YRVQHGSKQV AGTGLGLAIA RHIVRNHVGR IWVESPVPGQ IEGSAFRFTL RECSSA