| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0437 |
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| Symbol | |
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| ID | 8418242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 538916 |
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| End bp | 540895 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036998 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003197312 |
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| Protein GI | 258404570 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGA AAGCACGCCT CCTCTCCACT CTATTCATCA GTTTCGGCCT GATGGCGATC
CTGCTCACGC TGATCTCCCA CTGGGTCATT CTCAGTGATT TTGATCAGCT TGAGGTCAAG
ACCATGCGTG CCCATATGGA GCGTCTGGAC CGTGCGATGG ATAAGTCCTT GCAAAAAATC
GACCAGACAG CCCAGGCCTG GTCTCAATGG CGAGCCGCGG CCAATTTTGT CACTGACCGC
AATGACAAAC AAGTCTTTGC CTCCCTGCTG AACAAGCAGA CCATGCAGAC CCTGCATCTG
AACCTGCTCA TGCTGAGAGA CGCCTCCGGC GATATCCTCT TTGAACGCTA CTACGACTAC
ACCGAGCGCA AATGGATCGA ACCCATTTCA GGCACCCGGG GGCACCTGTT CCATCTTGCC
AGAGAAGGCT CTCCAGAGGT CAAAAAAGGG ATCTACGCGC TGCCCAAGGG GCCCTTGCTG
GTCAGCGCCA GGACCATCTC CTCGGCCGGG GAGCCGGTGG GGACCCTGGT CATGGGGCGC
ATCTTTTCCC AGCAGGAGGC CAAAAGCATG GCCTCGCTCA CAAATCTGGA CATTGCGGCC
TACGATCTCA AGCACCCGCC CCTGCCTCGC GACGTCAGCT CCGCCTTGTA CCACCTGAGC
CTCAAATCCC CCCGGCACAT CAAAGCCACG GACAATGGCC AATTGCACGG CTATATGCTG
GTCAAAGACC TTTTTGATTT TCCGGCTATC TTGTTCAAGG TGAGCCTGGA ACGCTCCATC
CACGCCCAGG GAATCCGGGC CGTAGCCATG CTCATGGCTT TTTTCGTGGC TGTCTTTGCC
CTGTTCGCCT TTGCCAATCG GTTTGTGTTC CTGCGCTACC TGATCCGCCC CTTTCGGTTG
TTGCGCGCTG ATCTGGACAA GATCGAGGAC CTCAGCGACC TCTCCAGGCG GGTCTCCATC
CCCCAGGAAC CCGAATTCCA GGCTGCGTCC CGGGCCATCA ACCGGACCCT GGCCAGTCTC
GAGGCCAACC GCAAGGAACT CACCGAGGCC CATGAACGCT ACAGCGCTGT GGTCAACCAG
AGTTCCGAGG CGATTTACAT GTACGACGCC CGGACCAAAA AAGTCCTTTT CGGCAATCCG
GCCATGGCCA ATCTGCTTGG CTACCGGAGT GAGGAATTGC TCCAGTGCAC CGTTTACGAC
CTGGTTGAGG CTTCCAAAAC GGATATCGAC GCCACGATCC AGAATATCCT CTTTGGCACC
CCTTTCGTGG GCGAGCGCTC CTACCGAACC AAGTCCGGTC ATCTGGTGCC CATGGAAATA
ACGGCCTCCC TGGTCCATTA CCAGGGCCGG CGGGTGGTCA GTGTTGTCGG TCGCGACATC
AGCGAGCGCA AAAAATCCGA AGAACGCATC CGGTATCTCG CCTACCACGA TCAGCTCACG
GGACTGCCCA ACCGGACCCT GTTTCTGGAC CGACTGGAGC AGTCCCTGAA GGAGGCCCGG
CGCAACAGGG ACAAGCTGGG ACTCTTTTTC CTGGATCTTA ACGATTTCAA ACACATCAAC
GATTGCCACG GGCACAAGGT CGGGGACCGG CTTTTGCTGC AGGTAGCCGA ACGTTTGCAA
TCCAGTCTGC GGGAAATGGA CACCGTGGCC CGCTTGGGAG GCGACGAATT CGTCGTCATT
GTCAAAGGCG GAGCCAGTCG GCACAATTGC CGCAAGGTCG CGCGGAAGCT TATCCAGTCC
ATCGATACCC CCTTTCTTGT GGAAGAAATC GATCAGGAAG TCCGCATCGG CCTGAGCATC
GGCATCAGTA TTTTCCTGGA CGATGCCGCT ACGCTGGAAG AACTTATCCA GCACGCGGAC
ACGGCCATGT ACGCCGCCAA GCGCAACCCC AGCAGCAGTT GGGAATTCTT TGCAGCTTCA
TCGGCCCCTG GAACCTGTCA AACCTCAAAC GCACCGGTCG AGTCCGGAGA GAACCAGTAA
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| Protein sequence | MTLKARLLST LFISFGLMAI LLTLISHWVI LSDFDQLEVK TMRAHMERLD RAMDKSLQKI
DQTAQAWSQW RAAANFVTDR NDKQVFASLL NKQTMQTLHL NLLMLRDASG DILFERYYDY
TERKWIEPIS GTRGHLFHLA REGSPEVKKG IYALPKGPLL VSARTISSAG EPVGTLVMGR
IFSQQEAKSM ASLTNLDIAA YDLKHPPLPR DVSSALYHLS LKSPRHIKAT DNGQLHGYML
VKDLFDFPAI LFKVSLERSI HAQGIRAVAM LMAFFVAVFA LFAFANRFVF LRYLIRPFRL
LRADLDKIED LSDLSRRVSI PQEPEFQAAS RAINRTLASL EANRKELTEA HERYSAVVNQ
SSEAIYMYDA RTKKVLFGNP AMANLLGYRS EELLQCTVYD LVEASKTDID ATIQNILFGT
PFVGERSYRT KSGHLVPMEI TASLVHYQGR RVVSVVGRDI SERKKSEERI RYLAYHDQLT
GLPNRTLFLD RLEQSLKEAR RNRDKLGLFF LDLNDFKHIN DCHGHKVGDR LLLQVAERLQ
SSLREMDTVA RLGGDEFVVI VKGGASRHNC RKVARKLIQS IDTPFLVEEI DQEVRIGLSI
GISIFLDDAA TLEELIQHAD TAMYAAKRNP SSSWEFFAAS SAPGTCQTSN APVESGENQ
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