Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0437 |
Symbol | |
ID | 8418242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 538916 |
End bp | 540895 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645036998 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_003197312 |
Protein GI | 258404570 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCTTGA AAGCACGCCT CCTCTCCACT CTATTCATCA GTTTCGGCCT GATGGCGATC CTGCTCACGC TGATCTCCCA CTGGGTCATT CTCAGTGATT TTGATCAGCT TGAGGTCAAG ACCATGCGTG CCCATATGGA GCGTCTGGAC CGTGCGATGG ATAAGTCCTT GCAAAAAATC GACCAGACAG CCCAGGCCTG GTCTCAATGG CGAGCCGCGG CCAATTTTGT CACTGACCGC AATGACAAAC AAGTCTTTGC CTCCCTGCTG AACAAGCAGA CCATGCAGAC CCTGCATCTG AACCTGCTCA TGCTGAGAGA CGCCTCCGGC GATATCCTCT TTGAACGCTA CTACGACTAC ACCGAGCGCA AATGGATCGA ACCCATTTCA GGCACCCGGG GGCACCTGTT CCATCTTGCC AGAGAAGGCT CTCCAGAGGT CAAAAAAGGG ATCTACGCGC TGCCCAAGGG GCCCTTGCTG GTCAGCGCCA GGACCATCTC CTCGGCCGGG GAGCCGGTGG GGACCCTGGT CATGGGGCGC ATCTTTTCCC AGCAGGAGGC CAAAAGCATG GCCTCGCTCA CAAATCTGGA CATTGCGGCC TACGATCTCA AGCACCCGCC CCTGCCTCGC GACGTCAGCT CCGCCTTGTA CCACCTGAGC CTCAAATCCC CCCGGCACAT CAAAGCCACG GACAATGGCC AATTGCACGG CTATATGCTG GTCAAAGACC TTTTTGATTT TCCGGCTATC TTGTTCAAGG TGAGCCTGGA ACGCTCCATC CACGCCCAGG GAATCCGGGC CGTAGCCATG CTCATGGCTT TTTTCGTGGC TGTCTTTGCC CTGTTCGCCT TTGCCAATCG GTTTGTGTTC CTGCGCTACC TGATCCGCCC CTTTCGGTTG TTGCGCGCTG ATCTGGACAA GATCGAGGAC CTCAGCGACC TCTCCAGGCG GGTCTCCATC CCCCAGGAAC CCGAATTCCA GGCTGCGTCC CGGGCCATCA ACCGGACCCT GGCCAGTCTC GAGGCCAACC GCAAGGAACT CACCGAGGCC CATGAACGCT ACAGCGCTGT GGTCAACCAG AGTTCCGAGG CGATTTACAT GTACGACGCC CGGACCAAAA AAGTCCTTTT CGGCAATCCG GCCATGGCCA ATCTGCTTGG CTACCGGAGT GAGGAATTGC TCCAGTGCAC CGTTTACGAC CTGGTTGAGG CTTCCAAAAC GGATATCGAC GCCACGATCC AGAATATCCT CTTTGGCACC CCTTTCGTGG GCGAGCGCTC CTACCGAACC AAGTCCGGTC ATCTGGTGCC CATGGAAATA ACGGCCTCCC TGGTCCATTA CCAGGGCCGG CGGGTGGTCA GTGTTGTCGG TCGCGACATC AGCGAGCGCA AAAAATCCGA AGAACGCATC CGGTATCTCG CCTACCACGA TCAGCTCACG GGACTGCCCA ACCGGACCCT GTTTCTGGAC CGACTGGAGC AGTCCCTGAA GGAGGCCCGG CGCAACAGGG ACAAGCTGGG ACTCTTTTTC CTGGATCTTA ACGATTTCAA ACACATCAAC GATTGCCACG GGCACAAGGT CGGGGACCGG CTTTTGCTGC AGGTAGCCGA ACGTTTGCAA TCCAGTCTGC GGGAAATGGA CACCGTGGCC CGCTTGGGAG GCGACGAATT CGTCGTCATT GTCAAAGGCG GAGCCAGTCG GCACAATTGC CGCAAGGTCG CGCGGAAGCT TATCCAGTCC ATCGATACCC CCTTTCTTGT GGAAGAAATC GATCAGGAAG TCCGCATCGG CCTGAGCATC GGCATCAGTA TTTTCCTGGA CGATGCCGCT ACGCTGGAAG AACTTATCCA GCACGCGGAC ACGGCCATGT ACGCCGCCAA GCGCAACCCC AGCAGCAGTT GGGAATTCTT TGCAGCTTCA TCGGCCCCTG GAACCTGTCA AACCTCAAAC GCACCGGTCG AGTCCGGAGA GAACCAGTAA
|
Protein sequence | MTLKARLLST LFISFGLMAI LLTLISHWVI LSDFDQLEVK TMRAHMERLD RAMDKSLQKI DQTAQAWSQW RAAANFVTDR NDKQVFASLL NKQTMQTLHL NLLMLRDASG DILFERYYDY TERKWIEPIS GTRGHLFHLA REGSPEVKKG IYALPKGPLL VSARTISSAG EPVGTLVMGR IFSQQEAKSM ASLTNLDIAA YDLKHPPLPR DVSSALYHLS LKSPRHIKAT DNGQLHGYML VKDLFDFPAI LFKVSLERSI HAQGIRAVAM LMAFFVAVFA LFAFANRFVF LRYLIRPFRL LRADLDKIED LSDLSRRVSI PQEPEFQAAS RAINRTLASL EANRKELTEA HERYSAVVNQ SSEAIYMYDA RTKKVLFGNP AMANLLGYRS EELLQCTVYD LVEASKTDID ATIQNILFGT PFVGERSYRT KSGHLVPMEI TASLVHYQGR RVVSVVGRDI SERKKSEERI RYLAYHDQLT GLPNRTLFLD RLEQSLKEAR RNRDKLGLFF LDLNDFKHIN DCHGHKVGDR LLLQVAERLQ SSLREMDTVA RLGGDEFVVI VKGGASRHNC RKVARKLIQS IDTPFLVEEI DQEVRIGLSI GISIFLDDAA TLEELIQHAD TAMYAAKRNP SSSWEFFAAS SAPGTCQTSN APVESGENQ
|
| |