| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0411 |
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| Symbol | |
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| ID | 8418216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 502890 |
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| End bp | 504239 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645036972 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_003197286 |
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| Protein GI | 258404544 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.969018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.535938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAA TACATACTCC GCAGCGCGTC GCAGTTATCG GCGGCGGGCT GGCTGGCTCG
GAAGCAGCCT GGGCCCTGGC CCACCGCGAT ATCGAAGTAA CGCTTTTCGA AATGAAACCG
GAGCGGTTCT CCCCGGCGCA CACCGAGTCC GGCCTGGCCG AACTGGTCTG TTCCAACTCC
TTGCGCTCCG ACGACACGAC CACGGCGGTT GGCCAGCTCA AGCGGGAAAT GGAGTCCGCC
GGCAGTCTGA TCATGGATGC GGCCCGGAAG ACCCGGGTCC CGGCAGGCAA AGCCCTGGCC
GTGGACCGGC ATGCCTTTTC CGCCGCCGTC ACCAGCGCCC TGGAGGCGCA CCCTCGTATT
GGTCTTCGGC GTCAGGAGAT CCGCTCGCTG ACCGACCCGG CCCTGTCCGG GTTTGACGCT
GTGGTTGTCG CGGCGGGGCC GTTGGCTTCC GAAACCCTGG CCGCGGATCT GGTCCAGCGC
ATCGGGGGGG AAGATCTCTA TTTCTATGAC GCCATCGCGC CGATTGTGAA CACCGATTCT
GTGGACATGG ACGTCGCCTT CTGGGCCTCA CGCTACAATC CGGAGGAGAA GGACTATCTC
AATTGCCCCA TGGACGAAGC GACCTATTAT CGCTTTCGCC AGGCCCTCCT GGACGGGGAC
AAGGTGCCGG CGCGGGAGTT TGAAAAGTCG GTCCATTTCG AGGGGTGTCT GCCTGTAGAG
ACCTTGGCTG AGCGCGGGGA ATTGGCCCTG GCCTACGGGC CGCTCAAACC GGTCGGCCTG
GAAGACCCGC GGACCGGGAA ACAGGCCTTT GCCGTGGTCC AATTGCGTCC CGAAAACGCG
GCAAAGACCA TGTGCAATCT GGTCGGGTTC CAGACCAAAC TGACCTATCC GGAGCAAAAG
CGGGTCTTTC GGATGATCCC CGGGCTGGAG CAGGCCGAAT TTGTGCGCAT GGGGTCCATC
CACCGGAATA CCTTTGTCAA TGCCCCGCGG GTCCTGCTCC CCCATCTGGA ACTTCGGGAC
ATGCCGGGCG TTTACCTCGC TGGCCAGATC ACCGGGGTCG AAGGGTATGT GGAGTCGGCG
GCCAGTGGGT TCTGGCTCGG GAAATTCCTT GGCGGGCGTT TGCACGGCGA AGCGGTGGAT
CTGCCCCCCG TGGAGACGGC GATGGGGGCG CTTTTGGGGC ATCTCTCCAC GCCGAACAAG
CATTTTCAGC CCATGAACGT GAATTTCGGT CTCATGCCCC CGCTCGGGGT GCGGGCCAAA
AAAGCCCGGC GTAAGGAACT CTACGCTGAG CGGGCCGACC GGGCTTGGCA GCATTGGCTG
GAGGGGCAAA CGACCGAGGA GCAGGCATGA
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| Protein sequence | MSEIHTPQRV AVIGGGLAGS EAAWALAHRD IEVTLFEMKP ERFSPAHTES GLAELVCSNS
LRSDDTTTAV GQLKREMESA GSLIMDAARK TRVPAGKALA VDRHAFSAAV TSALEAHPRI
GLRRQEIRSL TDPALSGFDA VVVAAGPLAS ETLAADLVQR IGGEDLYFYD AIAPIVNTDS
VDMDVAFWAS RYNPEEKDYL NCPMDEATYY RFRQALLDGD KVPAREFEKS VHFEGCLPVE
TLAERGELAL AYGPLKPVGL EDPRTGKQAF AVVQLRPENA AKTMCNLVGF QTKLTYPEQK
RVFRMIPGLE QAEFVRMGSI HRNTFVNAPR VLLPHLELRD MPGVYLAGQI TGVEGYVESA
ASGFWLGKFL GGRLHGEAVD LPPVETAMGA LLGHLSTPNK HFQPMNVNFG LMPPLGVRAK
KARRKELYAE RADRAWQHWL EGQTTEEQA
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