| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0409 |
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| Symbol | |
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| ID | 8418214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 499819 |
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| End bp | 501834 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645036970 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003197284 |
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| Protein GI | 258404542 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.918325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTGA CGCTGAAGAA TAAAATTTTC TTGTCCATGC TGACCGTTAT ACTGGTCATC
AGTGTAGCCA TCGCTTTTCT GGCCCGGTGG ATACTGGTCT CCGGGCTGAC GAGTGAGCTC
AAGATGCGGG GTGTGGCTAT TGCCCGGAGC ATCTCTGAGC GCGGCGGCGG CTATATCCTG
GACAAGGAGT ACCCGCAATT GTTGAGTCTC ATCTTTGACG AGGCCCAATT GCGGGAGCGT
CACCATCTGA TCGACTACAT CTACGTCCTC GACCGTGAGC ACACTGTCCT GGCCCACACC
TTTACCAGGC CGTTTCCCGA ATCGTTGCAC ATGGCCAATC CCATCCCGCC CGGCGCCCGG
GAAAGCATGC AATTGGTGCC GGTGGCCGAG GGAGAAGCCT TTGACATCGG CGTGCCCATC
AAAGAAGGCA TCTACCGCAT CGGCACGGTC CACGTCGGAT TGAACAAGAG CCACATCGAC
AGCCTTGTCT ACAAACTCCG GGTGACTTTT CTGGGGTTTA TCTCCGCGGT CGTGGTCATC
GTATTTGTTA TCAGTCATTT GCTGGCGAAA TACATCACCA GGCCCATCCG GTCGCTGACC
GGCGCCGCTG ATGAACTCAG CCGGGGGAAT TTCGACGTCT CTCTTGAGGA TTTAAGCGGT
GTGGAACTGG GCGACAAATT GCAGCAATGC CCGGCCTACC GGGATACGAA TGTGCCCTGC
TGGCATCTTG ACGGGGCGTC GCCGAACGAC GGCTGTCCGG AGGACATCGC CCAGGACGAG
CCGCAATGCC GGGAATGCGT TTTTTACCGC CCCCGCTCGG GCGACGAGGT CTCCCAATTG
GCCACGGCCT TTCGGAACAT GGTCGGCTCC ATCCGGCTGT ATCGCAAACG GCTCCAGGAA
TCGGAAGAAA AGTACCGCTC CCTGTTTGCC AGCGGACCGG ACCCGGTGTT CGTCCTGGCC
CAGGAGGATA TGCGCATCCT CGATGCCAAT CCCCGGGCGC AGGAGATTTA CGAATACGGG
GCCGACGAGT TGCGGGGTAT GCCCTTTGCC GAACTCGCTC CAGATCAGGC CCAGAAATGT
GTCCACGATT TCGTCGAAGA TATGCCCATG CAGGGGTGTG TCTATTATCC CAAGGAGATC
CATTACAAAC GGGACCAGCA TCCGTTCTTT GTCAATGCCC ACGCCTGCGT CATCAGCTAC
ACCGGCTGTC CGGCCCTGAT CGTGGCCTGC ACCGACATTA CGGAGATGAT CGAAAAAGAC
GCCCAACTCA TTCAGGCGGC GAAGATGAAG AGCCTTGGCG AGATGTCCGC CGGGATCGCC
CATGAGCTCA ACCAGCCGTT GAACGCCATC AAGATGGGCA GTGATTTTCT GGCGCTTACG
GTGGAGCGGG GGACGGAACT GCCGCCGGAA CGGTGGCAGG GCGTGGTCCA CGAAATCAGC
GCTCAAGTCG ACCGGGCCGC CGGCATCATC GCCACCTTGC GGGCGTTTGG TCGCAAAGAG
ACGCTTTCCA AGGATGTTCT GGACATCAAT GAGCCGATCA AGGCGGTGCT CTCTATCCTG
CGGCAGCAAT TTCAACTCCA CAATGTTGAT TTTCATCTGG CTCTTGGTCA GAATCTGCCG
CCTGTTCTGG CCCAGGACAC CCGGTTGCAG CAGGTTTTTT TCAATCTCTT TACCAACGCC
AAAGAGGCCA TTGAAGAGCT GCGCCGCAGT TCGCCGCAGG CCGAGGGCAC TATCCATGTC
CGGACCTGGG CGGCGGACGG GCGGGTCTGC GCTGCGGTCT GCGATACCGG GCCCGGTATC
CCTGATTCCC TGCGCCAGAC CCTTTTCGAG CCCTTTGTCT CCTCGAAGTC GAGCGGGCAG
GGCATGGGTT TGGGGCTGGC GATCACCCAG TCCCTGGTCC GCGACTATCA AGGGACCATC
ACCATCGACA GCACGCCGGG TGAAGGGGCG TGCTTTACGG TATCTTTTCC GGTGGCCAAG
ACCGCCCCGG GCGTTTTGCA AAGGAGCACC CCATGA
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| Protein sequence | MNVTLKNKIF LSMLTVILVI SVAIAFLARW ILVSGLTSEL KMRGVAIARS ISERGGGYIL
DKEYPQLLSL IFDEAQLRER HHLIDYIYVL DREHTVLAHT FTRPFPESLH MANPIPPGAR
ESMQLVPVAE GEAFDIGVPI KEGIYRIGTV HVGLNKSHID SLVYKLRVTF LGFISAVVVI
VFVISHLLAK YITRPIRSLT GAADELSRGN FDVSLEDLSG VELGDKLQQC PAYRDTNVPC
WHLDGASPND GCPEDIAQDE PQCRECVFYR PRSGDEVSQL ATAFRNMVGS IRLYRKRLQE
SEEKYRSLFA SGPDPVFVLA QEDMRILDAN PRAQEIYEYG ADELRGMPFA ELAPDQAQKC
VHDFVEDMPM QGCVYYPKEI HYKRDQHPFF VNAHACVISY TGCPALIVAC TDITEMIEKD
AQLIQAAKMK SLGEMSAGIA HELNQPLNAI KMGSDFLALT VERGTELPPE RWQGVVHEIS
AQVDRAAGII ATLRAFGRKE TLSKDVLDIN EPIKAVLSIL RQQFQLHNVD FHLALGQNLP
PVLAQDTRLQ QVFFNLFTNA KEAIEELRRS SPQAEGTIHV RTWAADGRVC AAVCDTGPGI
PDSLRQTLFE PFVSSKSSGQ GMGLGLAITQ SLVRDYQGTI TIDSTPGEGA CFTVSFPVAK
TAPGVLQRST P
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