| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0343 |
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| Symbol | |
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| ID | 8418148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 427906 |
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| End bp | 428847 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645036909 |
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| Product | Substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_003197223 |
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| Protein GI | 258404481 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC GGCTTTCTAT CGGACGGATT CTTTTCACTG TGCTGGTCTT CTCTCTTCTT
GCCCTGCCTG CCATGGCCTC CGGGCCGGTC AAATTCGGTG TCCCTTCCTG GCCGGGGGTA
ACGGTCAAAT CCGAGGTCGC CTCACAACTC ATCCGGGCCA TGGGCTATGA GGTCGAGCAG
ACGGTGGCCT CGCCCTCGAT CATTTTTAAG GCGATGACCC TGGGCGAGTT AAACGCCTAT
CTCGGTGGGT GGTCGCCGGT AGAAGATCCC ATGATTGATC CTCTGGTGGA AAAAGGGGAG
ATCATTCGTG TCGGGGCCAA CATTGAAGAA GCTGTGACCG CCCTGGTCGT TCCCTCGTTT
GTTGCCGAGG CCGGAGTGAC TTCCATTGAA GATCTGGCGG CGCACAAAGA CAAGTTTGAG
AGTACGATTT ACGGCATTGA ATCCGGGTCC GGGGCCAACA ACGATATCCA GGAAGCCATC
GATGCCAATG CCGCCGGGCT CGGCGATTGG GAACTGGCCG CCTCGTCCAC AGCTTCCATG
CTGGCCCAGG TGCAGAGCCT GAGTGAGAAC AAACGGTGGG CCGTTTTCTG GGGTTGGGAG
CCGCATTGGA TGAACGCGGT CATGGATCTG CATTACCTCC AATCCGAAAC CCCGGCGACG
GAAAAAATCG GGGCTTCGGT CAGCGTAGTC TACACCATCA CCTCGAACGA CCTCCCTGAA
GCCAATCCCC AAGCCTACGC GTTTCTGGAA CAGCTCAAGG TGCCTTCCGA TGTCCAGAGC
CAGTGGATCT ACGAGTATCG CCAACAAGAC AAAGAACCTG AAGATCTGGC TCCACAATGG
ATCAAGGCCA ATCTTGATGG GCTGGTGGGG CAGTGGCTGG AAGGTGTCCG TGCTGCCAAC
GGTGAGCCCG CCCTGAAAGT TGTCCGCGCG GCGTTCAAGT AA
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| Protein sequence | MSKRLSIGRI LFTVLVFSLL ALPAMASGPV KFGVPSWPGV TVKSEVASQL IRAMGYEVEQ
TVASPSIIFK AMTLGELNAY LGGWSPVEDP MIDPLVEKGE IIRVGANIEE AVTALVVPSF
VAEAGVTSIE DLAAHKDKFE STIYGIESGS GANNDIQEAI DANAAGLGDW ELAASSTASM
LAQVQSLSEN KRWAVFWGWE PHWMNAVMDL HYLQSETPAT EKIGASVSVV YTITSNDLPE
ANPQAYAFLE QLKVPSDVQS QWIYEYRQQD KEPEDLAPQW IKANLDGLVG QWLEGVRAAN
GEPALKVVRA AFK
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