| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0330 |
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| Symbol | |
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| ID | 8418134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 412467 |
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| End bp | 414062 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645036895 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003197210 |
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| Protein GI | 258404468 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGATT TGGCCGCTTT GTATCAGTTC GGCTTTCTGA GCTATTTTTA TTTTTTTGCT
TCCAGCATCG CTATCGCTCT GACCTTTTTG CTGTGGCGCC GCAGGACATT GATCGGTGCT
TGGTATTTGA TGTGGTTCGA GGTGGCTGTG GCTGCCTGGA GTTGTGCTGC GGCTTTTGAA
TTGGCGGCCA CAGTCGTGCC ACTGAAGATC TGGTGGACCC AAATTTCCTA TGTCGGGGTC
ACCAGCGCCC CTGTCTTTTT TTTCCTTTTT GCTGCTGAGT TTGGTCAGCA AAGCCATTGG
CTCTCCACCC AACGAATCGC CGCCCTTTTT ATTTTGCCCG CCTTTTTTCT GTTCGCTGCG
GCCACCAACC AATTTCACGG TCTGATCTGG CAGGAAGTCT GGATGAGGCC TGAAAGCTTC
TGGGCGATGT ATGAGCACGG CCCCCTTTTT TGGGCGCTGG TGGTGTATGA ATACAGCCTT
TTGGTGGCTG GCATTGTCTT TTTGCTTCAG GCCCAGCGTC TTTTCCCAGA TTTCTACCGC
ATCCAGAACA CCTTCCTGCT GATCGGGGTC CTTTTGCCCC TGGCAGGCAA CCTTGTCGAT
GTGTTCGGCT TCACGCCTCT GCCGGGTTTG AACTGGACGC CGATGTCTTT TGCGCTTTCC
GGGGTCATTC TCGCCCTGGG CATTTTGTGT TTCCGAGTCC TGGATGTCGT GCCCATTGCC
CGTAAACAGG TCATCGACGC TATGTCCGAA GGGGTCGCCG CTGTGGACAA TTCCGGACGT
ATTGTTGATG CCAACCCAGC GGCCTGCCAG TTCCTCCAGT CGGATGTTGC CGGGTTGATA
GGTATGCGGG CCCGGGATGT GTTCGCGCCG TGGTATGCGA CGCTTGTGGT CATGGAGCCA
GGTAGCGGCA GTGTCGAGAT CCGATTGCCC TACGGGTTCA AAGAGATGAG TTGGCTGGAA
ATCGAGCGCT CGGAAATACG GGATGCTCGG GGCCGATTGT GGGGACAGCT TGTTTTGATG
CGTGATGTTT CCGAACGCAA GGAGGCGGAA TCGCGCCTGC TCCAAATGGC GGCCACTGAT
GAGTTGACCG GCTTGTACAA CCGTCGCCGT TTTTTCGAAT TGGCCCGCGG GGAATTCAAT
CGTGCCAAAC GATATAGTAG CCCTATGACC ATTCTCCTTT TGGATATCGA TTATTTTAAA
CGCATAAACG ACGAATATGG TCACGACGCC GGAGATACGG CCCTGCGGTG CATTGTGTCG
ATGATTGCTT CGCAGTTGCG GAGTCTGGAT GTGCTAGCCC GGTTGGGCGG TGAAGAATTC
GTCGCCCTGC TTCCCGAAAC CCACCAGTTT GATGCCGAAC GGATTGCCGA ACGGATTCGT
AGTGAGATTG AGAGCACGGC CATCAATCTT TTTGAAACCA CTCTTTTTGT CACGGTGAGT
ATCGGCGTGG CTGGGTACTC CAAGGAAATG CAGGATGTCG GGGAACTGAT CAACCGGGCC
GACGAGGCTA TGTACCGCGC CAAGCGAGAC GGGCGCAATC AGGTTTGTTT GGCAACTCCT
CGAAATCTTG TCCAATCCAA GACGCGTCTT ACCTAG
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| Protein sequence | MLDLAALYQF GFLSYFYFFA SSIAIALTFL LWRRRTLIGA WYLMWFEVAV AAWSCAAAFE
LAATVVPLKI WWTQISYVGV TSAPVFFFLF AAEFGQQSHW LSTQRIAALF ILPAFFLFAA
ATNQFHGLIW QEVWMRPESF WAMYEHGPLF WALVVYEYSL LVAGIVFLLQ AQRLFPDFYR
IQNTFLLIGV LLPLAGNLVD VFGFTPLPGL NWTPMSFALS GVILALGILC FRVLDVVPIA
RKQVIDAMSE GVAAVDNSGR IVDANPAACQ FLQSDVAGLI GMRARDVFAP WYATLVVMEP
GSGSVEIRLP YGFKEMSWLE IERSEIRDAR GRLWGQLVLM RDVSERKEAE SRLLQMAATD
ELTGLYNRRR FFELARGEFN RAKRYSSPMT ILLLDIDYFK RINDEYGHDA GDTALRCIVS
MIASQLRSLD VLARLGGEEF VALLPETHQF DAERIAERIR SEIESTAINL FETTLFVTVS
IGVAGYSKEM QDVGELINRA DEAMYRAKRD GRNQVCLATP RNLVQSKTRL T
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