Gene Dret_0300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0300 
SymbolgatA 
ID8418104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp369509 
End bp370978 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content63% 
IMG OID645036865 
Productaspartyl/glutamyl-tRNA amidotransferase subunit A 
Protein accessionYP_003197180 
Protein GI258404438 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID[TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.921372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGACCA CTTCCTTGAT TCAGCTCCGC GACGCCCTGC GCTGCGGCGA TATTTCAGCC 
GAAAATGCGG TCAACACCTG TCTGGACCGC ATCCGGACCA CCGAACCGGT CGTCCAGGCC
CTGGTCCATA CCGATGCCGA AAACGCCCTG AACACGGCCC GGAGTCTCGA TGCCCAGGGG
CCTTCCGCGG ACATGCCGCT ATGGGGCGTT CCGATTATCC TCAAGGACCT TCTGGCGACC
AAAGGGCAGC CCACCACCTG CTGCTCGAAG ATGCTCGAGA ATTTCACCCC GTTTTACAAC
GCCCACGTTG TGGACCGCCT CCAGCAGGCT GGGGCCATTG TACTCGCCAA GTCGAACATG
GATGAGTTCG CCATGGGATC TTCCACGGAG AACTCGGCCG TCCAGCAGAC CAAAAACCCC
TGGGATACGA CCCGGGTCCC GGGCGGCAGT AGTGGCGGTT CGGCCGCGGC CGTGGCCGCG
GGACAAGCCC CTGGGGCCCT GGGCACCGAC ACCGGGGGAT CCATCCGGCA GCCGGCCGGG
TTCTGTGGCA TTGTCGGCCT GAAGCCGACG TATGGCCGGG TCTCCCGCTA CGGGCTGGTC
GCCTACGGCT CCTCGCTGGA CCAGATCGGT CCTATGACCC GTTGCGTGGC AGACAGCGCG
GCAATACTCC AGGCCATTGC CGGCCATGAC CCTAAGGACT CGACCTCCGT GGCTATCGAA
GTGCCCGACT ACACGGCCGC CTTGGAGCAG ACCACTGATC TCTCCGGCTG GCGCATCGGC
GTGCCCAGGG AATATTGGGG GGACGGGCTC AGCGACGAGG TAGCGGAGAC CTGCCGCGCG
TTTCTGGACC AGGCCCGGGA GCACGGGGCT GAACTCGTGG ACGTCTCCCT GCCGCACACC
AAATACGCCA TCGCGACCTA TTACATCCTG GTCATGGCTG AAGCGAGTTC GAACCTCTCC
CGCTTCGACG GAGTGCGTTA CGGCCATCGT GCCGATGACG CCGCAAACCT CATGGAAATG
TACAGCAAAA GCCGCAGCCA GGGGTTCGGC CGGGAGGTTC AGCGTCGTAT TCTGCTGGGG
ACCTACGCCC TTTCCGCGGG GTACTACGAC GCCTACTACA AAAAAGCCGC CCAAGTCCGG
CGTTTGATCC GGGACGATTA TCTTCAGGCC TTTGCGTCTT GCGATCTGCT CTGCGGGCCG
GTGGCACCGA CGACCGCCTT TGGATTGGGA GAAAAAACAG ACGACCCGCT GCAAATGTAC
CTGACCGATA TCTTTACCAA CCCGCTCAAC CTGACCGGGT TGCCGGGTCT CAGCCTGCCG
GCTGGAATCG GCAGGACCTC GGGGCTTCCG GTCGGGGTCC AGCTTTTTGG CCCCGCCTTT
GGTGAATCGG CCTTGCTCCA GGCCGGACAC GTTTTGGAAC AGGCCCGGGG GCCACTGCCC
GAGCCAACAG CCCTGGCTGG TCTGGACTAA
 
Protein sequence
MQTTSLIQLR DALRCGDISA ENAVNTCLDR IRTTEPVVQA LVHTDAENAL NTARSLDAQG 
PSADMPLWGV PIILKDLLAT KGQPTTCCSK MLENFTPFYN AHVVDRLQQA GAIVLAKSNM
DEFAMGSSTE NSAVQQTKNP WDTTRVPGGS SGGSAAAVAA GQAPGALGTD TGGSIRQPAG
FCGIVGLKPT YGRVSRYGLV AYGSSLDQIG PMTRCVADSA AILQAIAGHD PKDSTSVAIE
VPDYTAALEQ TTDLSGWRIG VPREYWGDGL SDEVAETCRA FLDQAREHGA ELVDVSLPHT
KYAIATYYIL VMAEASSNLS RFDGVRYGHR ADDAANLMEM YSKSRSQGFG REVQRRILLG
TYALSAGYYD AYYKKAAQVR RLIRDDYLQA FASCDLLCGP VAPTTAFGLG EKTDDPLQMY
LTDIFTNPLN LTGLPGLSLP AGIGRTSGLP VGVQLFGPAF GESALLQAGH VLEQARGPLP
EPTALAGLD