Gene Dret_0299 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0299 
Symbol 
ID8418103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand- 
Start bp368298 
End bp369347 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content61% 
IMG OID645036864 
ProducttRNA(5-methylaminomethyl-2-thiouridylate)- methyl transferase 
Protein accessionYP_003197179 
Protein GI258404437 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAACTG CTGTCGCTGT CAGCGGCGGG GCCGACTCCC TGTTTGCCCT GCTCGCCCTG 
CGTGAGGCGG GGCACGACGT TCTCGCCTTG CACGCGCACT TCCTGGCGCC GGATGCCGTT 
GACGCGGATG TTCAAGACCG TTTGCGCCAC TGCTGCAAGA CGCTTGGCGT GGATCTGGAA 
ATCGTCGACC TGCACCACAA ATTTGCCGAG TTGGTCATCA CCCCGTTTAT CGAGCACTAT 
GCGCAGGGGA TGACGCCCAA TCCCTGCGCG CTGTGCAACC CGCGGATCAA ATTTGGGATC 
TTGCGCGATG CCGCGAAACA ACTTGGCTGC AAGGGGTTTG CCACCGGCCA TTATGTCCGA 
CTCCTCCAGA CCCCGAACGG GCCTCTGCTG TGCCGCGGCA ACGATCCACG CAAAGAGCAA 
AGCTATTTCC TGAGTCTCGT CCCCCAGGCC AGCCTGGACA ATGTCGTCTT CCCCCTTGGA 
ACTCGACACA AATCAACGAT CCAGGGCGAA TTGGAGCAGC GGGGATTCAC CATCCCCGAG 
AGCGAGGAAA GCCAGGAAGT CTGCTTCATC CCAGACGACG ACTACCGGAG CTTTCTCCAA 
AACACCGGTG CCCCCCTCTC TGGCCCTGGC CCCATCGTCG ATCGGGCCGG CAACCAACTC 
GGCCATCATA GCGGGCTCTG GCGTTACACC CTGGGCCAAC GCCGAGGGCT CGGCATTGCG 
TACAGCGAAC CGCTGTACGT GATCGACAAA GAAATCCGCT CCAACCGTCT CGTCGTCGGC 
ACTCGGGCCG AGCGGCAGGC CACAGGCTGC TCGGTGCATG AACTGAACAC ATTGCTCCCC 
TTTGAAAAAT GGCCGGACCA GATTTGGGTC CAGACCAATT ACCGTCAGCA ACCGGTCCCC 
TGCCGCATCA GGATCGTGTC TGAAACAGGT ATGGAGATCT CTTTTCTAGA GCCCAAAGGC 
CCGGCTGCCC CCGGGCAGGT GGCAGCGTTC TACACGGCAA AGGGATATGT CCTCGGCGGC 
GGCATCATCC ATGACAGCAC AAGGACCTGA
 
Protein sequence
MRTAVAVSGG ADSLFALLAL REAGHDVLAL HAHFLAPDAV DADVQDRLRH CCKTLGVDLE 
IVDLHHKFAE LVITPFIEHY AQGMTPNPCA LCNPRIKFGI LRDAAKQLGC KGFATGHYVR 
LLQTPNGPLL CRGNDPRKEQ SYFLSLVPQA SLDNVVFPLG TRHKSTIQGE LEQRGFTIPE 
SEESQEVCFI PDDDYRSFLQ NTGAPLSGPG PIVDRAGNQL GHHSGLWRYT LGQRRGLGIA 
YSEPLYVIDK EIRSNRLVVG TRAERQATGC SVHELNTLLP FEKWPDQIWV QTNYRQQPVP 
CRIRIVSETG MEISFLEPKG PAAPGQVAAF YTAKGYVLGG GIIHDSTRT