| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0285 |
|---|
| Symbol | |
|---|
| ID | 8418089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 350712 |
|---|
| End bp | 352922 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645036850 |
|---|
| Product | Oligosaccharyl transferase STT3 subunit |
|---|
| Protein accession | YP_003197165 |
|---|
| Protein GI | 258404423 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1287] Uncharacterized membrane protein, required for N-linked glycosylation |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.272509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TTTTTTTTAC TAAGTTATTA ATTGTTTGTT TTTTGACTTA TGTTGCTGGT
TTATTTTTGA GATTCTGGGA ATTGCCGCTA TGGCTTGATG CGAGCTATTG GGTTGCGGGT
GAGCCCCTTA TGGCCACTCA TGACGCCTAC GCCTGGATGG CAGGGGCTAA AGGAGCAGGA
CGCTTGGTCG GCCGGCCCAT GTCCGAGTTG CTCGCAGGGC TCCATGCCCT GACCGGACTT
AATGTGGGGG TTATCAACTT CTGGCTTCCC GCAATCTGCG CTCCGCTTGC CGCCATCCCT
GTTTGCCTGC TTTGCGCGTA TTGGAGACGG CCTGAAGCCG GGTTAGCCGC AGGAGTGATG
GCGTCAGGCA GCTTGGGGTT CCTGTTACGA ACCCGCCTTG GATTTGGGGA CACGGATATC
CTGACGCTTT TCCTGCCGCT TCTTTTCGTA GCGGCACTGG TCTACTGGCT CACCCCTTTT
CTTTCCCAGA ACTGGGGCCA AGTCTTCCCT TTTCGCAAGC CCTCCTCACA GACCTCAAAA
AAGAAAAACG CTGACGCCCC TGAGAGGGAA CTGCTTTTCA GTGGTCCCCG GTTCTATTGG
GCCGCATTTG GCGCTGGTCT CATATTCCTC GCCTACTCCT GGTTCTACCC CAACGCCTAC
CCCATTGCCA TGTACGTGCT GATCACCGCC GTAGGGGTTG CCTGCCTGCT GAACCGCTCC
CTGCCCTGGC AGGACTTTTG GGCCGGGTTA GCCGTTGTTC TGGCTCTGGG AAAACTCGGT
TGGGTGGGAT TGATCATTGG CGGCGGCATC ACCTGGCTCG GACTGCAGCG CCCGGATATT
ATCCGCACCC GCTTCACAGG TACAGCGTTG CTCGCTGGCG TCCTGGTCCT TTTCCCCGTC
TTCCATGGCG CGGCAGTAGT GACCAAGCTC ATCGAACCGG CCTTGAGCTA CGCTAAAATC
AATCTCAGCC GGGAAACAGA GTCCTTGCTC AAGCTCCCGA CCGTCAAACA GAGTATCCGC
GAGGCCCAGA ATATCGATTG GCTGGCCATT ATGGACCGCT TGGCCGGGCA TTGGGCCCTC
TTTATCCCAG CCCTGCTTGG GACGGCCTGG ATGGTCATCA AACGCCCCCT GGCGCTCAGC
CTGCTACCGC TTTTGGGCTT GTCCATCCTC TCCTTCAAAC TCGGCAACCG ATTTGCCATG
TACGGGGGGC CTGTGCTCGG TCTTGGCCTT GGCTTCGGCA CAGTCTCGCT ATTGTCCACG
ATGAGTTCGA AACGTACGAT TCTCTGGTTT GGGGCCCTCT GCGTCGCCTT TGTTGCTTCC
TGTCCACTTT CTAATACAGC AGACATGTTG CGCCCAGGCC CTGTCATCCC CAAGATCTAC
GCCCAGACTT TTATGGAACT GGCCGAAAAT ACGCCCCAGG ACGCCCAGCT CTGGCAATGG
TGGGATTACG GCTATGCGGC CCAATACTAC GCCCAGCGAC GAAGTTTCGG CGACGGCGGC
GCCCACAGCG GCCCACACCT CTATCCACTG GCCAAAATCC ACTCCACAAA CTCGCCAGCC
AAGGCAGCCC AATTAATGCG CCTTATCGGG GCCCACGGAA AAGAGCAACG CCTCGAATGC
CAACACAACG GCACCAAGCC CCAGAACCCT GGGGCCTCTG TCCTGTACTA TCCTACCAAA
CCCCTGGCCC CACTAGAGGC GATGGGCCCG GAAAAGGCAC AGGACTTTGT GGACACCTTG
GACGCCGGGA CCGACCTCAC ACTGCCCGAG CAACCTGATC CGCAGTACTT CGTGCTTTCC
TGGGAAAACC TGCGCCTGGC CTATTGGATT ACCTATTTCG GCAATTGGAA TCTGGAAACC
GGCAACAGCT TCCACGGCCG CGTCCAGCGA GTGCGCAGAC AAGCCCAGTT CGATCTTCAA
CAGGGCGTGC TGCAAACCAC CGATCGCCAA GTTCCCCTGG TCAGCCTTGA TGTCATCGAC
GAATCTGGTC GCAACCACCG CTCCTGGCCG AATTCAGGCA ACATCCACGC CGTATTGAAC
CAGTTGTCCA GGGAACTCTA CATCATGGAC GACACGGTCT ATAATTCGCT TCTCGTGCAA
ATGCTCATCG GCGAGAGCGA CCAGTTCGCG CCCCATTTCG AGCTCGTCCA GGACCGTTTT
CCCTGGACAC GAGTGTACCG GGTCAGCGCA GCGGATACGA GTGGGCAATA A
|
|---|
| Protein sequence | MKKLFFTKLL IVCFLTYVAG LFLRFWELPL WLDASYWVAG EPLMATHDAY AWMAGAKGAG
RLVGRPMSEL LAGLHALTGL NVGVINFWLP AICAPLAAIP VCLLCAYWRR PEAGLAAGVM
ASGSLGFLLR TRLGFGDTDI LTLFLPLLFV AALVYWLTPF LSQNWGQVFP FRKPSSQTSK
KKNADAPERE LLFSGPRFYW AAFGAGLIFL AYSWFYPNAY PIAMYVLITA VGVACLLNRS
LPWQDFWAGL AVVLALGKLG WVGLIIGGGI TWLGLQRPDI IRTRFTGTAL LAGVLVLFPV
FHGAAVVTKL IEPALSYAKI NLSRETESLL KLPTVKQSIR EAQNIDWLAI MDRLAGHWAL
FIPALLGTAW MVIKRPLALS LLPLLGLSIL SFKLGNRFAM YGGPVLGLGL GFGTVSLLST
MSSKRTILWF GALCVAFVAS CPLSNTADML RPGPVIPKIY AQTFMELAEN TPQDAQLWQW
WDYGYAAQYY AQRRSFGDGG AHSGPHLYPL AKIHSTNSPA KAAQLMRLIG AHGKEQRLEC
QHNGTKPQNP GASVLYYPTK PLAPLEAMGP EKAQDFVDTL DAGTDLTLPE QPDPQYFVLS
WENLRLAYWI TYFGNWNLET GNSFHGRVQR VRRQAQFDLQ QGVLQTTDRQ VPLVSLDVID
ESGRNHRSWP NSGNIHAVLN QLSRELYIMD DTVYNSLLVQ MLIGESDQFA PHFELVQDRF
PWTRVYRVSA ADTSGQ
|
|---|
| |