| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0226 |
|---|
| Symbol | |
|---|
| ID | 8418030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 282666 |
|---|
| End bp | 285683 |
|---|
| Gene Length | 3018 bp |
|---|
| Protein Length | 1005 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645036791 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_003197106 |
|---|
| Protein GI | 258404364 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.174026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0776388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTCA CCCGAAGACA TTTTCTGAAG CTCTCCGCTT CGGCTGCGGC AGTCACCGCA
TTCGGCGGGC TGGGATTCAG CCTGAAGCCG ACCGCGGCAC AGGCTCAGCT GCTGAAATTG
CGCTGGGCCA AGGAAACCAC ATCCATCTGT TGTTATTGCG CGGTAGGGTG TGGACTGATC
GTCCATACCT CCCAGGAAGG ACAGGGCCGG GCCATCAATG TCGAAGGCGA TCCGGACCAC
CCCGTCAGTG AAGGCTCCTT GTGCGCCAAA GGGGCGGCCA TTTTCAACCT GGGCGAGAAC
GAAGACCGCA TCACTTCGGT TCTTTATCGC GCTCCGGGCA GCGAGAAGTG GCAGGAAACA
TCCTGGGATT GGGCCCTGGA CACCATCGCC AAACGGGTCA AGGAAACCCG TGACGCCACG
TTTACCCGGA CTAATGCCCA AGGGCAGGAA GTCAATCGGT GCAACGGCTT GGCCTCTGTT
GGCTCCGCCG CCATCGACAA CGAAGAGTGC TGGGTCTATC AGGCCATGCT GCGCTCTCTG
GGCCTGGTGT ATATCGAGCA CCAGGCGCGT ATCTGACACT CCGCAACGGT AGCGGCTCTG
GCAGAGTCGT TCGGACGCGG TGCGATGACC AATCACTGGA TCGACATCAA AAACAGTGAT
TGCATTTTGA TCATGGGCAG TAACGCTGCC GAAAACCACC CTGTCTCCTT CAAGTGGGTG
ACCAAGGCCC AGGAAAAAGG GGCCCAACTG ATCCATGTCG ACCCCAGGTA CACGCGGACT
TCGGCCAAGG CCGATATCTA CGCCCCCTTG CGTTCCGGTT CCGACATCGC GTTTCTTGGC
GGTTTGATCA AATATCTGAC CGACAAGGAA ATGGTGAACT GGGAATACGT CATCAATTAT
ACCAACGCGA CATTTATCCT GAGCGACGAG TACGGCTTCG AAGACGGCCT TTTTGCCGGC
TTTGATCCCA AGACCAAGAG TTACGATAAA TCCAAGTGGA GCTTTGTCCT CGACGAAAAC
GGCGTCCCCA AACGGGACAC CAACCTGGCG GATCCCCGGT GTGTCTACAA CCTCATGCGC
AAACACTACG AACGCTACAC CCTGGATAAG GTCTCCAAGG CGACCGGGAC GCCCAAGGAA
GACCTGCTCA AAGTGTACAA AGCGTACGCG GCGTCCTATA AAGCCGACAA ATCCGCGACG
ATCATGTACG CCATGGGCTG GACCCAGCAT ACCGTCGGCG TCCAGAACAT CCGCGCCATG
GCCATGATCC AGCTTCTGCT GGGCAATATT GGCGTGGCTG GCGGCGGCGT GAACGCCCTG
CGCGGCGAGT CCAATGTGCA GGGGTCCACG GACCATTGCC TCCTGTACCA CATTCTGCCG
GGGTATCTGA AGACGCCCAA GGCGTCGCAA CCGACGCTCC AGGCCTATAA TGAAGCCTAC
ACTCCGGTCA GCAATGACCC CAAATCCGCC AATTGGTGGC AGCATTATCC GAAGTACTCG
GCCAGCTTGA TCAAGGCCAT GTACAAGGAC GCCCCGATTG AAAAAGGGTA CAAATGGCTG
CCCAAACTTG ACGACGGCAA AGGGTATTCC TTCCTGGAAC TCTTTGACGC CATGTACAGA
GAAGAGATCA AAGGCTTTTT CGCCTGGGGA CAAAACCCCG CCAGCGGTCT GGCCAACTCG
AACAAATCCC GTGAAGCGCT GTCCAAATTG GACTGGATGG TCGTGACCAA CATCTTCGAC
AATGAAACAG CCTCGTTTTG GAAGGGCCCG AACATGGATC CCAAGTCCGT GGACACCGAG
GTCTTCTTCC TGCCGTGCGC TGTGTCTATC GAGAAGGAAG GTTCGATCAC CAACTCTGGA
CGCTGGATGC AGTGGCGGTA CGAAGGGCCG AAGCCCCTGC CGAACACCAA GACAGACGGG
GACATGATCG TCGAGCTGAC CAAACGGCTC CAAAAGCTCT ACGCCAATGA AGGCGGCACC
TACAGTGAGC CGATCGTCAA TCTGAGCACC GAACTGTGGG AAAAGAACGG CAAATACGAT
CCACACAAGG TGGCCAAGCT GATCAACGGT TTCTTCCTCA AGGACGTCAC CGTCCGCGGC
AAATCCTTCA AGGCCGGGGA TCAGGTCCCG AGTTTCGCCT ATCTCCTGGA AGACGGGACC
ACGACCTCGG GCAACTGGCT GTACTGCAAT TCGTACACCA ATGAGGGCAA TATGGCCGCC
CGGCGCGACA AATCCCAGAC CAAGATGCAG GCCAATATCG GTCTGTATCC GAATTGGTCC
TGGTGTTGGC CGGTCAATCG GCGGATCATC TACAACCGGG CTTCCGTGGA TCTCAAAGGC
AAACCGTACG CGCCCGACAA ACCGGTCATC AAATGGACCG GGGACAGCTG GGCCGGCGAT
GTTCCCGACG GTGGCTGGCC TCCGGGCGAA AAGCACGCCT TTATCATGCG CAAGCATGGC
TTTGGTCAGA TTTTCGGCCC CGGCCGGGCT GATGGACCGT TCCCGGAATA CTACGAACCC
TTGGAGTGCC CGCTGGAAGA ACATCCGTTC TCCTCGCAAC TGCACAATCC AACGGCGCTG
ACCTTTGAGG GGGCCATGGA CAAACGGCGT TCCTGCGATC CGCGCTATCC GTTTGTCGGC
ACGACCTATC GGGTCACCGA ACACTGGCAA AGCGGAGTCA TGACCCGTTG GCAGCCGTGG
CTTATCGAAG CCGAACCGGA ACTGTTCGTG GAAATGAGCC CGGAACTGGC CAAGATGCGC
GGCATCGAGA ACGGGGAACG AGTCATCGTG GAATCCGCCC GGGGTCAGGT CAAAGCTGTG
GCCATGGTTA CCCCGCGGAT GCAGCCCTTT ACGATTATGG GGCAGGTCAT CCACCAGATC
GGGCTCCCCT GGCATTACGG TTGGGTCTAC CCCAAAGACA GCGGTGACGC GGCCAATCTG
CTCACACCGT CTGTCGGGGA TGCGAATACC GGTATTCCCG AAACCAAGGC CTTCATGGTC
AATGTTCGCA AGATTTAA
|
|---|
| Protein sequence | MTFTRRHFLK LSASAAAVTA FGGLGFSLKP TAAQAQLLKL RWAKETTSIC CYCAVGCGLI
VHTSQEGQGR AINVEGDPDH PVSEGSLCAK GAAIFNLGEN EDRITSVLYR APGSEKWQET
SWDWALDTIA KRVKETRDAT FTRTNAQGQE VNRCNGLASV GSAAIDNEEC WVYQAMLRSL
GLVYIEHQAR IUHSATVAAL AESFGRGAMT NHWIDIKNSD CILIMGSNAA ENHPVSFKWV
TKAQEKGAQL IHVDPRYTRT SAKADIYAPL RSGSDIAFLG GLIKYLTDKE MVNWEYVINY
TNATFILSDE YGFEDGLFAG FDPKTKSYDK SKWSFVLDEN GVPKRDTNLA DPRCVYNLMR
KHYERYTLDK VSKATGTPKE DLLKVYKAYA ASYKADKSAT IMYAMGWTQH TVGVQNIRAM
AMIQLLLGNI GVAGGGVNAL RGESNVQGST DHCLLYHILP GYLKTPKASQ PTLQAYNEAY
TPVSNDPKSA NWWQHYPKYS ASLIKAMYKD APIEKGYKWL PKLDDGKGYS FLELFDAMYR
EEIKGFFAWG QNPASGLANS NKSREALSKL DWMVVTNIFD NETASFWKGP NMDPKSVDTE
VFFLPCAVSI EKEGSITNSG RWMQWRYEGP KPLPNTKTDG DMIVELTKRL QKLYANEGGT
YSEPIVNLST ELWEKNGKYD PHKVAKLING FFLKDVTVRG KSFKAGDQVP SFAYLLEDGT
TTSGNWLYCN SYTNEGNMAA RRDKSQTKMQ ANIGLYPNWS WCWPVNRRII YNRASVDLKG
KPYAPDKPVI KWTGDSWAGD VPDGGWPPGE KHAFIMRKHG FGQIFGPGRA DGPFPEYYEP
LECPLEEHPF SSQLHNPTAL TFEGAMDKRR SCDPRYPFVG TTYRVTEHWQ SGVMTRWQPW
LIEAEPELFV EMSPELAKMR GIENGERVIV ESARGQVKAV AMVTPRMQPF TIMGQVIHQI
GLPWHYGWVY PKDSGDAANL LTPSVGDANT GIPETKAFMV NVRKI
|
|---|
| |