| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0223 |
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| Symbol | |
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| ID | 8418027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 279225 |
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| End bp | 280565 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645036788 |
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| Product | Histone deacetylase |
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| Protein accession | YP_003197103 |
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| Protein GI | 258404361 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.195671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAAG TCGCCAACAG TCTCGGCGTT GTTTTTTTCC CGGCTTTTGA CTGGGCTATC
TCCCCAACGC ACCCCGAGCG GCAGGAGCGG CTCCTGTACA CCATGGATCA ACTGCAGGAG
GAGGGGGTCT TCGATATCCC GGGGATCGCC GAATATAAGC CGGATATTGC CAGTCTGGAG
GACGTGGAGC GGGTCCACTT CGCGTTTCCG CGCACCGAGG ACGTCCTCAC CGACTCCCAT
CTTATTTCGG CCGGGGGCGC CATCCGCGCC GGTCAGATGG TCCTGGACAA GGAGCGTGAC
AAGTCGTTCG CCCTGGTGCG CCCGCCGGGG CACCACGCCA TGAAGTCCGT GCACGGCGGC
CGCGGCTTTT GCAATGTGAA TATGGAAGCG ATCATGATCG AGCGGTTGCG CCGGCAGTAC
GGGGTGAACC GGGTGGCGGT GGTGGATACC GATTGCCATC ACGGCGATGG CACCCAGGAC
ATCTATTGGC ACGATCCGGA GACGCTGTTC ATCTCCCTGC ACCAGGACGG ACGGACCATT
TTTCCGGGCT CCGGCTTCCC CGGCGAGATC GGCGGGCCCA AAGCGGCCGG GCGGAACCTC
AATGTGCCGC TGCCGCCCGG GACAAGCGAT GCGGGATTTT TGTTGCTGAT GGACGAATTG
GTCTTGCCAG TGCTGCGGGA CTTTCAGCCG GAGCTGATTG TCCATTCCGC CGGGCAGGAC
AACCATTTTT CCGATCCCAT TACCTCCATG AATCTTTCGG CCCAGGGCTA CGCCCGCCTG
AGCCAGAAAT TGCAGGCCGA TATCGCCGTG CTCGAGGGGG GCTACGCCAT CGAAGGCGCC
CTGCCGTACG TCAATACCGG GATCATTCTC TCCATGGCCG GTCTGGACTT TTCCCATGTC
CGCGAACCAG CCCTGCGGCC CGAGAGCGTA GCGCAGGACG CGAAGATCAC CGAGTATCTC
AAGCAATTGG CCCCGGCGGT GCGGGATCTC TATTTCCATC CTCCGGAGAA GCTGATCGAC
CGGGAGAAGG AGGGGGATTT CTTCGTGCGC GACAAGGAAA TTTTTTACGA TACCGACGGG
CTCATGGAGC AGCAGCGGGA GTTTGTCCTG GATTGTCCGC ATTGCCCCGG GCTGTATAAG
GTCCAGACCT CCTCGACCAA GACCCCCTTT TGTCTGGGGA TCGAACTGGG GAGGCAGTGC
TGCGACAGTT GCGCCAGACG CGCGGAGGAG GAATTCGCCC GGGCCCAGAA AAGCCTTCGG
TATGCGGTTA TTCAATATAT TGACCGCATT CAGGATTTCT CGCAACGGGT CGTGGGCGAC
GCTATGGACA AGGAGATGTA G
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| Protein sequence | MLKVANSLGV VFFPAFDWAI SPTHPERQER LLYTMDQLQE EGVFDIPGIA EYKPDIASLE
DVERVHFAFP RTEDVLTDSH LISAGGAIRA GQMVLDKERD KSFALVRPPG HHAMKSVHGG
RGFCNVNMEA IMIERLRRQY GVNRVAVVDT DCHHGDGTQD IYWHDPETLF ISLHQDGRTI
FPGSGFPGEI GGPKAAGRNL NVPLPPGTSD AGFLLLMDEL VLPVLRDFQP ELIVHSAGQD
NHFSDPITSM NLSAQGYARL SQKLQADIAV LEGGYAIEGA LPYVNTGIIL SMAGLDFSHV
REPALRPESV AQDAKITEYL KQLAPAVRDL YFHPPEKLID REKEGDFFVR DKEIFYDTDG
LMEQQREFVL DCPHCPGLYK VQTSSTKTPF CLGIELGRQC CDSCARRAEE EFARAQKSLR
YAVIQYIDRI QDFSQRVVGD AMDKEM
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