| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0180 |
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| Symbol | |
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| ID | 8417984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 228572 |
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| End bp | 230395 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036745 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_003197060 |
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| Protein GI | 258404318 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0115715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTGGT TGTTGTACCG CCTTGCCATC CTGCTCATGG CGAGCACCTG CTGCGTCCTC
CCTGTGCGCT CGGCCTTTGC CGCCCACGCC CTGGCCATGA ATGGTGAACC AAAATACAGC
GCTGACTTCA CCCATTTTGC CTACGCCAAT CCGCAGGCGC CCAAGGGCGG TCATGTCCGC
CGAGCCGCCA TCGGCACCTT TGACACCTTC AATCCCTATG TTCCCAAAGG CATGGCGCCG
CAGGGAATCG GCCTTATCTA CGACACCCTG TGTGTCCAGT CCATGGACGA ACCATTCACG
GCTTACGGCC TTCTGGCGCA AGACATAACC GTGCCCCCGG ATCGCTCCTG GGTGCGCTTT
ACGCTTCGCG AAAACGCCCG TTTCCACGAC GGCCACCCCG TGCACGCCGA GGATGTGGCC
TTCACTTTTG AGCTGCTCAT GGCAAAAGGG AGTCCAACAT ATGCAAACTA TTACGGGGAC
GTGAGCGAGG TCGAGGTTCT GGGCCCCAGA CAAATCCGCT TCACTTTCGA GCACGCCAAC
AACCGTGAAC TGCCGCTTAT CCTCGGCCAG CTGCCGGTGC TGCCCAAGCA TTTCTGGAAA
GGGAAGGATT TCACTTCAGC CGGATTGACA CGCCCCCTGG GCAGCGGCCC GTATACCATC
GAGACGTTCA AGCCCGGACA TTTTGTGCGC TACAAACGCG TTGCCTCCTA TTGGGGCGCT
GACCTTGCCG TGAACACCGG GCGCTACAAT TTTGATTCCC TGCAATACGA CTATTTTCGG
GACACCACTG TGGCCTTGGA GGCATTCAAG GCCGGTGAGT ACGATTTCCG ACAAGAAAAC
ACCGCCAAAC ACTGGGCCAC GGCCTACACC GGTCCAGCGG TGGACCAAGG GCATATTGTC
AAGGAACGCA TCCCCCATGA CCGACCTCAA GGTATGCAGG CCTTTATCTA CAACACCCGG
CGGCCTCTGT TCAGCGATCC CGAAGTCCGG CGGGCCTTGG CCTACGCCTT TGATTTCGAA
TGGACCAACT CCCAGCTGTT TTACGGCCAG TACACGCGGA CCAAAAGTTA TTTTTCCAAT
TCTGAACTCG CCGCACAGGG ACCGCCTGCC CCGGAGGAAC TGGCTCTGCT CGAACCGCAC
CGCAGCCACC TCCCCGAAGA AGCACTGACC TCGGCCTACA CCGTGCCCAG CACCGAAACA
ACGCCCCTGC GCCAAAACCT CCGGCAAGGT CTGCGCCTCT TGCGCCGGGC GGGGTGGACG
ATGCAAGACG GGCAACTGGT GCACAAGCAA ACGGGAAAAT CGTTTCAATT TACCATATTG
TTGCGTTCCC CGAGTTTCGA ACGAGTCGTG CTGCCCTTCA AACGCAACCT GGCCAAACTG
GGGATCACCA TGGAGATCCG CCGCGTCGAT GCCTCCCAAT ATGTCAACAG ATTGCGGAGC
TTCGATTTCG ACATGCTCAT AGCGACCCTG CCCCAATCCA ATTCACCAGG AAACGAGCAG
CGGTATTTCT GGACCTCCGA AGCCGCCTCC ACCCCCGGGA CCTACAACTA TATGGGCGTC
GACAACCCGG CCATCGACGC CCTGGTCGAA CAAGTCGTCA CCGCCCCGGA CAGGGAAAGC
CTCATCACCC GGTGCCGCGC CCTGGACCGC GCCCTGTTGT GGGGACACTA CGTCATTCCC
CAATGGCATC TCGGGGCCCT GCGCGTCGCG CGCTGGGATA TTTTCGGTCG CCCGGAAAAG
ATGCCCCGCT ACGGGCTCGA TTTTTTCACC TGGTGGGTCG ACCCGGACAA GGCCGCTGCC
GTAAGAGCCT TTCAGGGGCG CTAG
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| Protein sequence | MSWLLYRLAI LLMASTCCVL PVRSAFAAHA LAMNGEPKYS ADFTHFAYAN PQAPKGGHVR
RAAIGTFDTF NPYVPKGMAP QGIGLIYDTL CVQSMDEPFT AYGLLAQDIT VPPDRSWVRF
TLRENARFHD GHPVHAEDVA FTFELLMAKG SPTYANYYGD VSEVEVLGPR QIRFTFEHAN
NRELPLILGQ LPVLPKHFWK GKDFTSAGLT RPLGSGPYTI ETFKPGHFVR YKRVASYWGA
DLAVNTGRYN FDSLQYDYFR DTTVALEAFK AGEYDFRQEN TAKHWATAYT GPAVDQGHIV
KERIPHDRPQ GMQAFIYNTR RPLFSDPEVR RALAYAFDFE WTNSQLFYGQ YTRTKSYFSN
SELAAQGPPA PEELALLEPH RSHLPEEALT SAYTVPSTET TPLRQNLRQG LRLLRRAGWT
MQDGQLVHKQ TGKSFQFTIL LRSPSFERVV LPFKRNLAKL GITMEIRRVD ASQYVNRLRS
FDFDMLIATL PQSNSPGNEQ RYFWTSEAAS TPGTYNYMGV DNPAIDALVE QVVTAPDRES
LITRCRALDR ALLWGHYVIP QWHLGALRVA RWDIFGRPEK MPRYGLDFFT WWVDPDKAAA
VRAFQGR
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