| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0172 |
|---|
| Symbol | |
|---|
| ID | 8417976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 218129 |
|---|
| End bp | 219526 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645036737 |
|---|
| Product | Peptidase M23 |
|---|
| Protein accession | YP_003197052 |
|---|
| Protein GI | 258404310 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0593266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATTG CCCCGCATTC ACGACACAAG CTCCATTTTC AGCGTCCCCG GAAGACCTCT
CCGCGGCGGG TCGGCATTGT CGCTGTCCTC GGTCTGATTT TGTTTGCCGC CAGCCTTATT
TCCCTGCCTG AAGACGAACC GCCCAAGCCG AACTTCCAGG ACACATCCTC GCCGGTACAG
GCGGGTCAGC CCCAGCAGAC ATCCAAGGCA CAGCAGACTG CCAGCAAACC AGTTGCCAAA
GAACCCTCCC TGGGCAGCCA AATGGCCGCT CCCCGGGCCG AAGCGGCCTT GCCGCCGTTG
GAAACGACCA AGGGGACCAT CCAGCCCGGC CAGACCGCGA CACAATTGCT GGCAAACTAT
TTCGAAGCAC CCACGATTTA CGCCTTGAGC CGCCAATGCG AGGAGGTCTA TCCCCTGACC
CGCCTCAAAG CCGGACAACC TTACACTATC GCCTCGCGCA ACGGCGAATT CAAACAGCTC
AGTTATGAGA TAAACGAAAC GGCGAAGCTG CTGATCGAAA AGCAGGACGG CGAATTTTGC
GTTGCCAAAC AACCGATCGC CTACGAAACC AGGAAAACCT TGGTCAGTGG AACTATACAC
TCCAGCCTGT ACACGGCAGT CTCTGAAGCC GGAGAAGAGC CGGAATTCGC GTTGTTGCTT
GCAGAAATCT TTGCCTGGGA TGTCGATTTC GTCCGGGATC TGCGCCAGGG AGACCATTTC
ACCGCCCTTG TGGAAAAACG GTACCGCAAA GGAAAGCACA GCGGATACGG CCGGATTCTG
GCCGCCAGTT TCACCAATAA AGGCAAAACG TTTCAGGCCT TCTGGTACGA GGATACCCAG
GGAGAAGGCT CCTATTTCGA TGCCCGCGGA CAATCGGTAC GCAAAGCCTT TTTGAAGGCA
CCGCTTTCCT TCACCCGCAT CTCCTCAGGG TATTCCAACA ACCGCTTGCA CCCCGTGCTC
AAAATCCGCC GCCCCCACCA CGGCATCGAT TACGCGGCCC GAACTGGCAC CCCTATCAAA
ACCGTAGGTG ACGGTGTTAT CATGACTCGC TCCTACGCCA AAGGCGCGGG CCGGTACGTC
AAGGTCCGCC ATCCCAACGG CTATGTCACG GTCTATAACC ATATGAGTCG CTTTGCCAGC
AATCTGCGGA CCGGCCAAAA AGTCCGGCAG GGGGAGGTCA TCGGTTATGT AGGCAGCACC
GGACTCTCCA CCGGCCCCCA TCTCGATTTT CGCATGAAAA AACACGGGAC GTATGTCAAT
CCGCTCAAGG TGGAGTCTCC CCCGTGCGAA CCGGTTCCCA GCGAAGAGAA AGAACGATTC
CAGGCCCACA TCCAACCGTT GCTCGCCCAA CTTCAGCAGG CGGAACAGCA ATACCTGGCC
ACGGCCGAGA CCCCGTAA
|
|---|
| Protein sequence | MRIAPHSRHK LHFQRPRKTS PRRVGIVAVL GLILFAASLI SLPEDEPPKP NFQDTSSPVQ
AGQPQQTSKA QQTASKPVAK EPSLGSQMAA PRAEAALPPL ETTKGTIQPG QTATQLLANY
FEAPTIYALS RQCEEVYPLT RLKAGQPYTI ASRNGEFKQL SYEINETAKL LIEKQDGEFC
VAKQPIAYET RKTLVSGTIH SSLYTAVSEA GEEPEFALLL AEIFAWDVDF VRDLRQGDHF
TALVEKRYRK GKHSGYGRIL AASFTNKGKT FQAFWYEDTQ GEGSYFDARG QSVRKAFLKA
PLSFTRISSG YSNNRLHPVL KIRRPHHGID YAARTGTPIK TVGDGVIMTR SYAKGAGRYV
KVRHPNGYVT VYNHMSRFAS NLRTGQKVRQ GEVIGYVGST GLSTGPHLDF RMKKHGTYVN
PLKVESPPCE PVPSEEKERF QAHIQPLLAQ LQQAEQQYLA TAETP
|
|---|
| |