| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0171 |
|---|
| Symbol | |
|---|
| ID | 8417975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 215007 |
|---|
| End bp | 217952 |
|---|
| Gene Length | 2946 bp |
|---|
| Protein Length | 981 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645036736 |
|---|
| Product | Glu/Leu/Phe/Val dehydrogenase |
|---|
| Protein accession | YP_003197051 |
|---|
| Protein GI | 258404309 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.875485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGCG CCGAACAACC GGAACAGGAA GCCACCCTCC AGCAGGTCAA GGACAGCCTG
GCCTCCTTGG CCGATCACGT CGTGCCCTGG TTTTACCAGA ACATGCACGA ATACTATTTC
AAGACCCACT CCCCAGCCGA ACAACTCCGG CATCTTCAAG CCATCATCAC CGGGCAGGTC
ACCACCGACA ATCAAAGCGT CCAGCTCAAA AGCCCCTGCG GCACGCGAAT CACCTATATC
TCGCCGGGAG CGGACCTCGA CAACCTCATC CACGCCCTGG AACAACTCAA AGAGTACAAG
ATCCAGACCG CGCGCATCTA CCCCAGCTTT GACGGATCGC TCCGACTCGA TACGTTCCAT
CTCGCCTCGG CGCAGCCCAC CTCAACGCAG AACCACGATT TTACCCCGCT GGCTGTCGAA
CTCGAACACA ACCGTCTCAT CTCCAGTCAG GAGAAAAAGC CCTTTCTCCA ATTCCTGGAT
TGCGCTTCGA GCGACTATGT CGAAAAATTC GAACCCGGTC GTGCGGCCCG CCATTTCAAG
CTGATCCAGG ACATCGCCGG AACCGAGCGG GTCATGGTCC AATTGGAAAC CGAGGTCTAT
CCTGGCGAGG ATCGCATTAC CTTGGCCATG AACAATCCGC CGCGATGCGG GCTGCTCTTG
GAGATCATGA AAACATTGCA GCGCATGGGT GTGAACACCC GCCGCGCCTA TGCCGATCTC
TTCGCCCCCC AGGACCGCGA CAGCGCCGCG ATCATCAGTC TCTATCTCCA ATGCGAAGCC
CAAAACGGAC TCAGCTGTTC CTGGGACCGG TTGCTCCAGG AATTACGGAT GGTCAAATGG
TACGCCCCTG ACGCCCTGGA GTGGTTCGCC GCCCAACGGC AGTGGCCGCT GGCCGACGTC
GCCTTGCTCC AAGCGGCCTG CGACTTCGTC CACCATGTCC TGGTCAAACG GGATGTCTAC
GCCTATACCC TGGAACGGAT CCACAAGGTC GTCCAAGACA ATTTCGACCT CACTGAAGAC
CTCCTGCGGT ACTTCCAGGC CCGATTCGAT CCAGCAGAAA ATGAACGAGA GGACCTTCTC
TCCCTTCGCG AGGGCAACGT CCGTCAAGGC CTGCACGACA TTTTCGACGA AACCACCCGA
ACCATTTTCA AGACGCTCTT CACCTTCTTC AAAAGCACAC TGCGCACGAA TGCTTTTGTC
CCCCGACGCC TCGGACTGGC CTTCCGCCTC GATCCTCGTG AACTCGGGGC CCTGTACCCA
GACAAGGAAA CGCCTTTCGG TGTTTATTAT TTTCATGGAC CGCGCTTTTC CGGTTTTCAT
GTCCGCTACC GGGATATCGC CCGCGGCGGT GTCCGCCTGG TGCCGACCAA CACCCAGGAA
CAATACAAAC TCGAAAGCAA CCGGCTTCTG GACGAAGTCA CCGGCCTGGC CTGGGCCCAG
CAATACAAAA ACAAGGATAT ACCTGAGGGA GGATCCAAGG CGGTCTTGCT GCTGAAACCA
GGTGGCGAGA TCAATCTTAC ATGGCGGGCC ATGATCGATG CCCTTTTGGA CCTCATCGTC
TGCACCGAGC AGGAACTCGT GCTGCCCGAT GTGATCGACT ACCTCAAGCG ACGGGAAATC
ATCTATCTCG GTCCCGACGA GCACATCACC CCCGAGCATA TCACCTGGGC CGTGAACCGG
GCCAAGCACC GGGGCTACCG CTACCCTGCG GCCTTCATGA GTTCCAAACC CGAGGCCGGC
ATCAACCACA AGGCTTACGG AGTCACCAGC CTCGGCGTAG TCGTCTTTGT GGAAGAGGTC
CTCAAGTCGC TCGGACTGGA CCCGGCACAC ACCGATTTTA CGCTCAAAAT GACCGGCGGA
CCGGCCGGAG ATGTGGCCTC AAACGCCATG CGCTTCCTGA TTGCTGGCTA CCAGGAACAC
GCCCGCATCC TCTCCATCTC CGATGGCCAC GGAGCGGCCT ATGATCCCGC AGGGCTGGAC
CACACCGAAC TGCTGCGTCT GATCGAGGCC GGGGAACGGG CGCACCAATT CAACCCGGAG
CGCCTTTCCG ACTCCCAGGC CTTTGTCATA GAGGCCGACA CCCCGGAAAA TATCCGCATC
CGGGACGAAC TGCACAACAC GGTCCAAGCC GATGTCTTTC TGCCTTGCGG GGGACGGCCG
GAAACCATCA ACGAACAAAA CTGGCACCGG TTTCTGGACA GCCGGAAACG TCCCTCAGCC
AAGGCCATTG TCGAGGGGGC GAATATTTTC CTCTCCCCCG TGGCCCGCGA CCATCTCCAG
GCCGCCGGTG TTCTGATCGT TCACGGCTCT TCAGCCAATA AAACCGGGGT CATCGCCTCT
TCGTATGAGA TTCTCGCCGG CTTGCTCCTG GACGACGCAG CGTTTATGGA GATCAAGACA
CCTTATATCG AAGAGGTTTT GGAGATCCTG AAACAGCGGG CCCGCGACGA GGCGCGGTTG
CTGCTCAAGG AATACACATG GCGCGGCGGG ACCCAGCCCT TGACCGACCT GACTGTGCGC
TTGTCCGAAG AAATCAATCA GCTCGGGGAC ACCATCGCCC ACAGCCTGGT CTCCAGGGGG
GGCGACCTGA ACAAGGCCCC TCTTCTCCGC CAATGCCTCT TCGACTATTG TCCCCCTGTC
CTGGTGGAAA AACACGGCGC GCGCCTTGTC CGCGAGCTGC CAGAGCGTCA TTGCTGGGCC
CTGCTTGGCG CGGCGCTCGC CTCGCGCATC GTGTACCGGG AAGGATTGGG CTGGCTCCGC
GAACTGAGCA GCGTGCGCGA CATCTTTGAC GTCGCCACAG CCTATTTGGA ACAAGAAGCC
CGACTCACCG ATTACTTAGG CCAACTCAAG GATTCCGGTG CGGCCAATGC AACAGACATG
ACCGCCATCT TGCAGAACAT GGGACGGAAA TACCTGACCG CGCGGCACCT CGGCCTCGAC
GAATGA
|
|---|
| Protein sequence | MSGAEQPEQE ATLQQVKDSL ASLADHVVPW FYQNMHEYYF KTHSPAEQLR HLQAIITGQV
TTDNQSVQLK SPCGTRITYI SPGADLDNLI HALEQLKEYK IQTARIYPSF DGSLRLDTFH
LASAQPTSTQ NHDFTPLAVE LEHNRLISSQ EKKPFLQFLD CASSDYVEKF EPGRAARHFK
LIQDIAGTER VMVQLETEVY PGEDRITLAM NNPPRCGLLL EIMKTLQRMG VNTRRAYADL
FAPQDRDSAA IISLYLQCEA QNGLSCSWDR LLQELRMVKW YAPDALEWFA AQRQWPLADV
ALLQAACDFV HHVLVKRDVY AYTLERIHKV VQDNFDLTED LLRYFQARFD PAENEREDLL
SLREGNVRQG LHDIFDETTR TIFKTLFTFF KSTLRTNAFV PRRLGLAFRL DPRELGALYP
DKETPFGVYY FHGPRFSGFH VRYRDIARGG VRLVPTNTQE QYKLESNRLL DEVTGLAWAQ
QYKNKDIPEG GSKAVLLLKP GGEINLTWRA MIDALLDLIV CTEQELVLPD VIDYLKRREI
IYLGPDEHIT PEHITWAVNR AKHRGYRYPA AFMSSKPEAG INHKAYGVTS LGVVVFVEEV
LKSLGLDPAH TDFTLKMTGG PAGDVASNAM RFLIAGYQEH ARILSISDGH GAAYDPAGLD
HTELLRLIEA GERAHQFNPE RLSDSQAFVI EADTPENIRI RDELHNTVQA DVFLPCGGRP
ETINEQNWHR FLDSRKRPSA KAIVEGANIF LSPVARDHLQ AAGVLIVHGS SANKTGVIAS
SYEILAGLLL DDAAFMEIKT PYIEEVLEIL KQRARDEARL LLKEYTWRGG TQPLTDLTVR
LSEEINQLGD TIAHSLVSRG GDLNKAPLLR QCLFDYCPPV LVEKHGARLV RELPERHCWA
LLGAALASRI VYREGLGWLR ELSSVRDIFD VATAYLEQEA RLTDYLGQLK DSGAANATDM
TAILQNMGRK YLTARHLGLD E
|
|---|
| |