| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0147 |
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| Symbol | rpsA |
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| ID | 8417951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 191085 |
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| End bp | 192812 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645036712 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_003197027 |
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| Protein GI | 258404285 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000164989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.503273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAACCA ACATTCCGGC AGAAGCTGAA ACCGAAAACG AGGAGATGAG CTTCGAGGCA
GCTCTTGAAG ATTATCTCCA ACCCGACTTC GGCGAAGTTG AAGACGGGAG CATTGCGCGC
GGCGAAATCG TGCGTATCGG TGACGAATCC GTTCTCGTGG ACGTGAATTT CAAGTCCGAG
GGTGAGATTC CGATCGCCGA ATTTCAGGAT AGTGAAGGAA ATCTGAAGGT TTCCGTGGGC
GACAAGGTCG ATGTCTTTGT CGTGCACAAG GATGAACTCG AAGGCACCAT CCGGTTGTCC
TATGAGCGGG CCAAGCGCAT GAAGGTCCTG GACGATCTGG ATGAGAAGAT GCAGAACGAG
GAGAACGTCA CCGGCCGTAT CATCCGCCGT ATCAAAGGTG GTTATGTGGT CGAGGTCCAC
GGCGTGGAAG CGTTCCTGCC TGGTTCGCAT GTCGATCTGC GGCCAGTCCC GGATATGGAC
GCCCTGGTCG GCCAGGACTT CGAATTCCGG ATTTTGAAGA TCAACCGCCG TCGCAGCAAC
GTGATCGTTT CCCGGCGGGT TCTCCTGGAA GAAGAGCGCG AATCCAAGCG TCAGGAGTTG
CTCAAGACCC TGGAAGAAGA TCAGGTTGTT CACGGCAAGG TCAAAAATAT CACCGAATAC
GGCGTATTTG TCGATCTCGG CGGGCTCGAC GGCCTGCTGC ACATCACAGA CATGGCCTGG
AAGCGTATCC GGCACCCGAA AGAAATGGTC CAGCTCGGCG ACGATCTGGA GCTCAAGGTG
CTCAATTTCG ACCAGGAATC CGAAAAGGTT TCCCTGGGCC TGAAGCAGCT CGTTCCGGAC
CCGTGGGTGG ACATCGCCAA CAAGTTCCCC GAAGGAGAGA AATTCTCCGG CAAGGTCACC
AATATTGTGG ATTACGGGGC GTTTGTTGAG CTGGAACCTG GAGTGGAAGG TCTGGTGCAC
ATCTCCGAGA TGTCCTGGAC CCGCAAATTG CGCCATCCCT CCCAGGTCTG CCAGGTCGGC
GACGAAGTCG ACGTGGTCAT CCTCGGCGTG GATTCCGATC GCAAGCGGAT CTCGCTGGGC
ATGAAGCAAG TCCGGCCGAA TCCCTGGGAT GTGGTTTCCG AAAAATATCC TGAAGGGACC
GTCCTGGAGG CGCCGATCAA GAACATCACC GATTTCGGCA TGTTTATCGG CATTGAAGAT
GGGATCGACG GGCTTATCCA CGTTTCCGAC ATCTCCTGGA CCAAGAAGAT CCGCCACCCC
AATGAATTGT ACCAGGTCGG TGACGTGGTG CAGGCCAAGG TGCTGACGGT GGACAAGGAG
AACGAGAAGT TCACTCTGGG CATCAAGCAG CTCTCTGAAG ATCCCTGGAG CCAGATCCCG
GCCCGCTATC CCGTGGGCAC CAATGTGGAA GGCAAGGTCA CGAATATCAC TGACTTTGGT
CTTTTCGTCG AGGTCGAAGA GGGCATTGAA GGCTTGGTCC ATCTCTCTGA ATTGAGCCGG
AAAAAGATCA AGACCCCCAG TGAACATTTC GAGGAAGGGC AAGAGGTGTC CGCCAAGGTC
ATCCATGTCA GTGGCGATGA ACGCCGTCTC GGCCTGTCCA TCAAACAGTT CGAGGAAGAG
GAAGAGCAGC AGCGCAACCG CGAATTGAAG AATCAGCCCG GTGCAGCTAC CCCGAGTGGC
AACAATCTGG GTGATTTGAT CCGGCAGAAG CTTGAGGACA GTGAATAA
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| Protein sequence | MSTNIPAEAE TENEEMSFEA ALEDYLQPDF GEVEDGSIAR GEIVRIGDES VLVDVNFKSE
GEIPIAEFQD SEGNLKVSVG DKVDVFVVHK DELEGTIRLS YERAKRMKVL DDLDEKMQNE
ENVTGRIIRR IKGGYVVEVH GVEAFLPGSH VDLRPVPDMD ALVGQDFEFR ILKINRRRSN
VIVSRRVLLE EERESKRQEL LKTLEEDQVV HGKVKNITEY GVFVDLGGLD GLLHITDMAW
KRIRHPKEMV QLGDDLELKV LNFDQESEKV SLGLKQLVPD PWVDIANKFP EGEKFSGKVT
NIVDYGAFVE LEPGVEGLVH ISEMSWTRKL RHPSQVCQVG DEVDVVILGV DSDRKRISLG
MKQVRPNPWD VVSEKYPEGT VLEAPIKNIT DFGMFIGIED GIDGLIHVSD ISWTKKIRHP
NELYQVGDVV QAKVLTVDKE NEKFTLGIKQ LSEDPWSQIP ARYPVGTNVE GKVTNITDFG
LFVEVEEGIE GLVHLSELSR KKIKTPSEHF EEGQEVSAKV IHVSGDERRL GLSIKQFEEE
EEQQRNRELK NQPGAATPSG NNLGDLIRQK LEDSE
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