| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0145 |
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| Symbol | |
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| ID | 8417949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 186886 |
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| End bp | 189273 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036710 |
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| Product | MscS Mechanosensitive ion channel |
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| Protein accession | YP_003197025 |
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| Protein GI | 258404283 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.584574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCAAT CCCCTTTTTC TGAAAAACTC CCTTCTGTCG CAACGCTTCT TAGTCTCGTT
TTTTTGACTC TGCTTCTGCC TCTTCCTGGG AGGGCCCAGC CTGAGGAGCC GGACACCGAG
ACCCAGCGCT GGGAAGCGCT TTTGGCCAAC AAACAGGAAG AAGTCTCCGA CCTTGGCGAA
CAGCTCGACC AGATCCAATC CACCTATGAG GCCAACACGG CCGAGGCCCA AAAACAGATC
GAGGCCCTGA CCGACGAACT CAACCGCTTG ACCGCCCTGA AAGGGCTCTC AGCACACAAC
CCCCGGGAGA CCCTTGGGCT ACGCAACACG ATCCAGTCTC TGACAACGCA GCTCAATTCG
GACACCATGC CCCTCAGGGA AGCGCAGAGT CGGCTTGAGA CCATTGCCCA CGAACTCGAT
GTGCGCCAAA AGGAGTTGCA GGAAACCACA CCGCCCACGC CCCAGGGCCA AAAAACGTTG
GTCAATTACC AAAAAGACCT GAAAAACCTC CAACGCCGGG CCAATACCCT GGAAACCCGG
ATCCAAAAGA GCCTCGCCCC AGCTCTAGAA CTGGAGAAGG AACTCAACGC GACTGTGACC
GCCCTGGACA AAACCTTGAG TTCGGTCTGG CGGCAGTATT TCTTTGAACC CTCTCCAACG
TTGCTGGCCT TTCAGGATCC CGGGAGCATG CAACCCCTGA CCCGCTGGAT GAAATACCTG
CCCACCTATA CCCGTGTGGT CCTTTTGGGG GATATCGACT GGTTTGCACT GGGCTCCGTG
GTGCTGGTCT TTTTCGCCTT GTCCATGCTC CCGATTCATC TCTGGATTTT GCCGGCGCTG
GAAAAGAGTT CGCTGCAGCT GACAATGCGC GAGATGGCGC CCCCCTTGTA TTGGGTAGCA
TTGGGCCTGG CCCTGATGGT CTCCACAACG ATCCTCCCCA GTGGTCAGGG CTGCCTGGTC
CGCAGCTTCA CCCAGCTTTT TTTGAGTTGG GGCATCATGC TCGCCCTTTG GCCGTTGCGG
CAGTATCAGC TCGGCGAGAA CGCCCCGCGG CGCAACCACA TCCGCCTTTT GTGGACGCTG
TATGCCATCG CCGTCATCCT CCAGGATATC AATCTGCCGC CCCTGTTTTT GGGTCCGCTC
TGGGCCGGAG TGCTGGTCAT GGGGGCTATC TGGAGCAAGA AGCGGTGCAC GCCGGACAAA
CCGAAACTGG AACGGTCCAT TTTTGGGGCC AGTATCCCGT TTTTCATCCT CCTCATTATC
GGGTCACTCA CCGGATATGT CCATTTCACG CTCTTTCTCA CCGCTGCGTG GTTTGTTTTC
TGGCTCGCGG TCCAAATCGG TACCGGGATG GCGGCCTTAT TGCGGTCCTG GAGTGCCCAG
ACCTCACCGG CGCTGCTGGA AAACCTGCTC AAAGGCGTAG CGCAAGGAGT GGGATATCCC
CTGGTCTGGC TGGGGGCGCT GTCCCTGTTG ATCGGCTGGC TCGGCTACAG TCTTGGCGGC
TATCCCTTCC TGAACGAACT GCTGCAGCTC AAGGTGGGCT GGGGCAAGGT CTCCTTCAAT
TTCATGCGCA TCCTGGGGGT GGTCATCGGG TTCTATATCG CCCGCTCCGG CCTGATCATC
CTGCGGTCCC TGTTCGACAA CGTCATCCGC AAACAGGACC ACTGGGAAAA AGGCACGGCC
GAATCCTTGC AGACGATCAT CTCCTATGCG GTTTGGGGGC TTTTTGCCCT GGCGGCCATG
TATTTTCTCG GCTTCAATTT CACCAGCCTG GCTGTTATCG CTGGTGGTTT GAGTGTGGGT
ATTGGTTTCG GACTCCAGAG CATCATCAAC AATTTTGTCA GCGGCCTGAT TCTGCTTTTC
GGACGCTCCA TCCAACCCGG TGACATCGTG GACCTTTCCG GAACGTGGGG TCAGATCAAA
CGGGTCAACA TCCGCACAAC TGTGGTCCAG ACCTTTGACA ACTCGACTAT CTTCGTGCCC
AATGCCGAAC TCATCGGCGG GCGGATCACG AATTGGACCC ACAAGGACAT CAGCCTGCGC
CGGCGGATCG ATGTTGGGGT GGCCTACGGC TCAGACACGG AAAAGGTCAA ACGGCTCTTG
CTTGAGCAGG CTCGGAAGCA CCCCCAGGTC TTTCGCTACC CGGAGCCCTT TGTCCGGTTT
GCCAACTTCG GCAACTCGAC CCTCGATTTC ATTTTGTATT TCTGGTCCGA CATCAATAAC
GGCTGGCATG CGGAATCCGA TCTCCGATTC CAGATCGACC AGGCTTTCCG GGAAAACGGA
GTCGAGATCG CCTTTCCGCA ACAGGATCTG CACATCCGGT CCGCCGCGGG TTTGGACCCG
TATCTCGCCC GGCCTGCCTC TGCTACCGGG AACACCAGCG AGACATGA
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| Protein sequence | MPQSPFSEKL PSVATLLSLV FLTLLLPLPG RAQPEEPDTE TQRWEALLAN KQEEVSDLGE
QLDQIQSTYE ANTAEAQKQI EALTDELNRL TALKGLSAHN PRETLGLRNT IQSLTTQLNS
DTMPLREAQS RLETIAHELD VRQKELQETT PPTPQGQKTL VNYQKDLKNL QRRANTLETR
IQKSLAPALE LEKELNATVT ALDKTLSSVW RQYFFEPSPT LLAFQDPGSM QPLTRWMKYL
PTYTRVVLLG DIDWFALGSV VLVFFALSML PIHLWILPAL EKSSLQLTMR EMAPPLYWVA
LGLALMVSTT ILPSGQGCLV RSFTQLFLSW GIMLALWPLR QYQLGENAPR RNHIRLLWTL
YAIAVILQDI NLPPLFLGPL WAGVLVMGAI WSKKRCTPDK PKLERSIFGA SIPFFILLII
GSLTGYVHFT LFLTAAWFVF WLAVQIGTGM AALLRSWSAQ TSPALLENLL KGVAQGVGYP
LVWLGALSLL IGWLGYSLGG YPFLNELLQL KVGWGKVSFN FMRILGVVIG FYIARSGLII
LRSLFDNVIR KQDHWEKGTA ESLQTIISYA VWGLFALAAM YFLGFNFTSL AVIAGGLSVG
IGFGLQSIIN NFVSGLILLF GRSIQPGDIV DLSGTWGQIK RVNIRTTVVQ TFDNSTIFVP
NAELIGGRIT NWTHKDISLR RRIDVGVAYG SDTEKVKRLL LEQARKHPQV FRYPEPFVRF
ANFGNSTLDF ILYFWSDINN GWHAESDLRF QIDQAFRENG VEIAFPQQDL HIRSAAGLDP
YLARPASATG NTSET
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