| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0142 |
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| Symbol | |
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| ID | 8417946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 182491 |
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| End bp | 184302 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036707 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_003197022 |
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| Protein GI | 258404280 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.454848 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTCC CGGACGAGAT TACGGACTCA TACGGGAATA CACACACGTC TGAGCTTTTC
CGGGCTGTGA CAATGAGAAC TTTGCTGCCG CGTACGTGTA TCGCCCTTTT GCTGGGGGCC
CTGCTCTTCG GAGGCCTGAG TGGCCTGCCG GACAACCGGG CTGTGGCTGC CACGTCCACG
CAATTGTTCC AACACGGCTG GAAATCATTC CACAGTTTAC GCAAAAACGC CGAACGGGCG
CGCTTCCGTT CGTCCTGGAT GCAGGTCAAA AACACGTTCT GGGAGTTGTA TCAACGCAAT
CCCAACGGCG GCTACGCCCC AAAAGCGCTC TACTATCTGG GCCGGGTCTA CAGTGAGCTG
GGGCAGCGGT CCTATTTGCG CAAAGACTTC CGGCAGGCGA CAGACTACTA CCAGCGCGTG
GTCACCCGCT TTCCCCGCCA CAGCTGGTCC GACGACGCCC AATTGCGCAA AGCACGCATC
CACCTCGAGC ATCTGGGTGA AAAAAACCAA GCGTATCTCG ACCTGCTTTC CGTGGTCCAC
AACTACCCCG ACGGCGACAT GTACGCCAAG GCCAGATCGC TTCTGGACCA ACTGGACCGC
AAGAAGGAAG CCGCCCCAGC CTCTGCCCAA AAGGCGCCCC AGCCGAGCCC AAAAAAACAA
TCCCCCAAGC CCCAGAAGGC CTCTGCCGCA GCCGGTATGG AGAAATTGCT CCGCATCCGG
CACTGGAGCA GCGACGACTA CACTCGAGTC GTTTTGGATG TCAGCGGGGA AGCCGAATTT
TCCAAGAAGC TGCTCAAGCC TGACCCCAAA CTCAACACCC CGCACCGTCT CGTCGTGGAC
CTGCAAAAGA CCCGTCTGGC CGACAAATGC GAAGAGGCCC ACAAAATCCG GGACGGACTG
CTGCGCCGGG TACGGACCGG GCAGTACCGC CACGACACCG CCCGGGTGGT GCTGGATATT
GAAAAACTCG ACAAATACCG TGTTTTTTCC CTGCAAAACC CCTACCGCGT GGTGCTCGAC
GTCTATGCCC CAGAAGGCGG CCGCTCCAAA AGCGCGCCCC AGGTCGCCGG ATACCAGTTT
GACGCCAAAA GCAAAAAATA CACCTCCAGC CTGGTCGAAC AGCTCGGCCT GACTATCCAG
ACGGTCATGA TCGATCCGGG CCATGGCGGC AAAGACCCGG GCGCGGTCCA CGGCGACATC
TACGAGAAGG ACATCAACCT CTCTGTCGCC AAGACCCTCG GCGCCAAACT CAAAAAGCAG
GGATTCGATG TCCTGTACAC CAGGACCAAG GATGTCTTTG TGCCTCTGGA GGAGCGCACC
GCCTTGGCCA ATTCCAAAAA AGCCGACCTC TTTATTTCCC TGCACGTCAA CTCGCACCGC
AAAGCCAACG TCCAGGGGTT TGAACTGTAC AGCCTCAACT TGGCCAAAAG CAAAGACGCC
GTGCGGGTCG CAGCCCGGGA AAACGCGGTC TCTGTCAAAA AAATCAGTGA CCTGCAGGTC
ATTCTCACCG ACCTCATGCT GAACACGAAA ATCAAGGAAT CCAAACAACT AGCCAAGAGT
CTCCATGCAA AGACCCTTGC CCACTCCCGC CAATTCTATT CGGTCCGTGA CCACGGTGTC
CGGGAAGCCC CTTTTTACGT CCTGATGGGG GCCAAGATGC CGGCCGTTCT TGTGGAAATG
GGCTACCTCT CCAATCCGAC TGAACGAAAG CGATTGCTCA CCGCTAAGTT CCAGCAGCGC
ATCGCCCAAG GCCTCGTTCA GGGGATCACC GCCTACAAAC AGACCATCGA CAATTACGCC
CGGCTGGAAT AG
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| Protein sequence | MPLPDEITDS YGNTHTSELF RAVTMRTLLP RTCIALLLGA LLFGGLSGLP DNRAVAATST
QLFQHGWKSF HSLRKNAERA RFRSSWMQVK NTFWELYQRN PNGGYAPKAL YYLGRVYSEL
GQRSYLRKDF RQATDYYQRV VTRFPRHSWS DDAQLRKARI HLEHLGEKNQ AYLDLLSVVH
NYPDGDMYAK ARSLLDQLDR KKEAAPASAQ KAPQPSPKKQ SPKPQKASAA AGMEKLLRIR
HWSSDDYTRV VLDVSGEAEF SKKLLKPDPK LNTPHRLVVD LQKTRLADKC EEAHKIRDGL
LRRVRTGQYR HDTARVVLDI EKLDKYRVFS LQNPYRVVLD VYAPEGGRSK SAPQVAGYQF
DAKSKKYTSS LVEQLGLTIQ TVMIDPGHGG KDPGAVHGDI YEKDINLSVA KTLGAKLKKQ
GFDVLYTRTK DVFVPLEERT ALANSKKADL FISLHVNSHR KANVQGFELY SLNLAKSKDA
VRVAARENAV SVKKISDLQV ILTDLMLNTK IKESKQLAKS LHAKTLAHSR QFYSVRDHGV
REAPFYVLMG AKMPAVLVEM GYLSNPTERK RLLTAKFQQR IAQGLVQGIT AYKQTIDNYA
RLE
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