| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0117 |
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| Symbol | |
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| ID | 8417921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 156078 |
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| End bp | 157412 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645036682 |
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| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
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| Protein accession | YP_003196997 |
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| Protein GI | 258404255 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
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| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCATG TGGAGGTCAC GGTCCCGGCA AGCAAGTCCC TCTCCCATCG GGCTTTGATT
TGCGCTGGTC TGGCACTTGG AGTCAGTCGG GTGGAAAACG TCCTGGACAG TCAGGACCTG
GACCGGACCC GTGCCTGTCT CGAAGCGCTG GGCACCCAAT TCGAGGTCGA GGCCGACGGA
CTTGTGGTCC GAGGGCGCGG CGGTATCGGC CAGGTCAATC AGGCGAGTCT CGATGTCGGC
GAATCCGGCA CCACCTGCCG CCTGCTCACG GCTGTGGCCG CAGCCGGTTC AGGGGTGTTT
TCCCTTGCCG GGCAAGGTCG GATGCACCAG CGGCCCATCG CGCCGCTGGC TTCGGCTCTT
CACCAACTCG GATGCCGCTT TGAATGGCTC GAGGCGGACG GCTTTCTGCC CTGCCGGGTG
CATAGCTCAG GGCTCAAAGG GGGGCAGACG ACAGTGGCCC TGGATGAAAG CAGCCAATTT
CTCTCCGGGT TGCTGCTGGC CTCGCCGCTG GCCTGTGATC CTCTGACTAT TGGGATCGGC
GGACAGCGGG CCGTCTCCTG GCCCTATGTG GCCTTGACTC TTGAAGTGAT GCGTTTTTTT
GGACAGGAGC CGATCCTGGA ACAAGCGCAC GGCGAGAGAT GGCACTCCGT GCCCTTTGAG
AGCAATCCCT CCATCGAGCC AAGTAAAACG CGGTTTCGTT GCCATCCCGG GGTCTACTCG
CCGCAACGCT ATCGGGTCGA GGGCGACTGG AGCAACGCGT CCTATTTCGT GGCCGCTGGT
GCCATCGGGC CCCGCCCTGT GCGGTTGCGT GGTTTGTATA AGGATTCTCG CCAGGGCGAT
CGGGTCATTG TGGACATCGT CAAACAATTC GGTGCGTACG TTGAGTGGGG GCGGGAGTCG
CTGGTCGTCG CTCCTGGACC TCTTCAGGGG CAGGAATTGG ACATGGGCCC TTGCCCGGAT
CTCGTCCCGA CGGTGGCGGT GATGGCCAGT CTGGCGGAAG GCCCCACGGT GATCAAGAAT
ATCGCGCATC TGCAGCTCAA GGAGAGCGAC CGTCTCAATG GCGTGGCCAA TGAGTTGCGC
AAGGCCGGGG CCGAGGTCAC CGTTGAAGCG GATACCCTGA CGATCATCCC CTGTCCGCTG
GGGACCAAAC CGCTGCGATT GTCGACTTAT GATGATCACC GTATGGCCAT GGCCCTTTCC
CTGTTCCAGT TGGCCGGGTT GCATCTCCAA TTAGACAATC CCGGTTGCGT GGCCAAATCC
TTTCCCCGCT TCTGGGAACA ATGGGACAAG GTCCGTCAGG CATCGGAAGG AACGTCCGAA
AGGCCTGGAA ATTGA
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| Protein sequence | MYHVEVTVPA SKSLSHRALI CAGLALGVSR VENVLDSQDL DRTRACLEAL GTQFEVEADG
LVVRGRGGIG QVNQASLDVG ESGTTCRLLT AVAAAGSGVF SLAGQGRMHQ RPIAPLASAL
HQLGCRFEWL EADGFLPCRV HSSGLKGGQT TVALDESSQF LSGLLLASPL ACDPLTIGIG
GQRAVSWPYV ALTLEVMRFF GQEPILEQAH GERWHSVPFE SNPSIEPSKT RFRCHPGVYS
PQRYRVEGDW SNASYFVAAG AIGPRPVRLR GLYKDSRQGD RVIVDIVKQF GAYVEWGRES
LVVAPGPLQG QELDMGPCPD LVPTVAVMAS LAEGPTVIKN IAHLQLKESD RLNGVANELR
KAGAEVTVEA DTLTIIPCPL GTKPLRLSTY DDHRMAMALS LFQLAGLHLQ LDNPGCVAKS
FPRFWEQWDK VRQASEGTSE RPGN
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