Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0087 |
Symbol | |
ID | 8417891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 117707 |
End bp | 119569 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 645036652 |
Product | Lytic transglycosylase catalytic |
Protein accession | YP_003196967 |
Protein GI | 258404225 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATATG TATTCCCCCG TGCCTTTGTC CTCGTGTTGT TGCTGGCCGT TGGCTGCGCA CCGCTGACCA ACTCCCCGCA GTCGCAGCAC ACTGGGAAAA TGCAAAATGC CACTCCGGAG AACACAGCGG TCAATGCGAG TTGCCCTGTG AGCGCTGCGC CGTCAGCCGT GACTGAGAAA GCGGCAAGAA ATGCGTCGAA GCCTGAGCAG CAGGATCTTG CGGCTGAGGC TACCGGAAGC GATGCCGATC TGAAACAGCC TCTGGAAGAA GAGGTCCAGG CGGATGTCTC CAGCAACGCC ACTGACAAAG AGCCTGCGTT GACCCAGGCC GAAAAAAAGG CCCTGGAGTC GGAAGCGGAA ATCCAGTTCG ACCTCGACGT TCGGGAAACC GAACGGATGC AGAAATTTTT CCGCTATTAT ACCCATAAAC ACCGCAAGAC CTTTCAGCGT TGGCTCAAGC GGGCCGAACC GTATCTGCCG CACATCCGGA AGGTGATCAC GGAAAAGGGG CTGCCGCAGG ACCTGGTTTT CCTGCCCTTT GCCGAGAGTG GCTTCAACCC GTGGGCCTAT TCCCGGGCCG GTGCGGCCGG GTTGTGGCAA TTCATGCCCG CCACCGGACG CCATTTCGAT CTCCGGGTTG ACTGGTGGAT GGATGAGCGC CGGGATCCCT ACGCCTCTAC CCAGGCGGCG GCGGAATACC TCTCCCGCCT CTACGGTCAA TTCCAGGACT GGTACCTGGC CCTTGCCGCC TACAACGCCG GTGAAGGCAA TGTTGGTCGG GCCCTGGAGC GCAGCGGCTG CGACAATTTC TACGATCTCG CCTCGAGCAG ACGGTACCTC AAATCCGAGA CCCGCAATTA TGTGCCCAAA TTTCAAGCTA TCCTCAAGAT CGTTCGCAAT CTCGAGGAAC TCGGCTTCGA GCCCATCGAC TGGGACGCGT CTCCCGAGCC CTCGCAGGTG GCCATTAAAG GGGGCACTGA TCTCATGGGC TTGGCCGATG CCACGGGTAT GAGCTGGTCC GAATTTCGGA AAGCCAACCC GAAATTCCGG CGTACGGTCA GCCCCCCGGA CGCGAGCTAT CAGGTGCAGA TCCCGGCCCC CAAGGTGGCG CAGGCCAAGG CCTATCTCGA CGGCCCCCGG GCCCAGAAAA TGGCCGGCGG CAAACGGTAC CGGGTGCGCA GCGGCGATTC CTGGTGGCGT ATCGCCCGCC GTTTTGACGT GCCGCTGACC GCGCTGATGC GCTTGAACAA TACCCGGTCG AAGATGCTCC ATCCCGGGGA CTCGGTGCTT ATCCCGGTTT CCGGGGAGGC GGCCCGGGCC CGCGTCGCAG CACAGGACGG GGAATATGTC GTGCAACGCG GTGATTCCCT CTGGGAGCTT GCCCGCCGGA TGGACACCAC CGTCACCAAA TTGCGCCGGG CCAACAATTT GCAGAATACG ACCCTTCGCG TGGGGCAGCG CCTGACCATT CCGGGGGGCT CCCAGAAGGC CAAGACCCGG CAGATCGCCC AGCGCCGCTC CAACTATACG GTCAAAAAAG GCGACACCCT CTGGGAACTT TCGCGCCGTT TCGGCCTCAG CCTCAATACG CTGGTTCAGG CCAACGGTAT CGGCAGGTCG AGCGCGTTGC AGGTCGGGCA GAAGCTGTAC ATCCCGGACC GCGGCCGGAC GACGCAAGTG GCCAAGGCCC GGGAGAAGGC CGCCCATCAA CGGCTGGTCC GGTACACGGT CCGCCAGGGC GACAATTTGT GGACCATTGC CCGCCGTTTT GGTGTCAGTG CCGACGCCCT GCAGGACTGG AACAACCTGG GCAAGAACGA ATTGATCCAC CCTGGCGACA ATCTTCGGGT CTATATTCAA TAG
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Protein sequence | MPYVFPRAFV LVLLLAVGCA PLTNSPQSQH TGKMQNATPE NTAVNASCPV SAAPSAVTEK AARNASKPEQ QDLAAEATGS DADLKQPLEE EVQADVSSNA TDKEPALTQA EKKALESEAE IQFDLDVRET ERMQKFFRYY THKHRKTFQR WLKRAEPYLP HIRKVITEKG LPQDLVFLPF AESGFNPWAY SRAGAAGLWQ FMPATGRHFD LRVDWWMDER RDPYASTQAA AEYLSRLYGQ FQDWYLALAA YNAGEGNVGR ALERSGCDNF YDLASSRRYL KSETRNYVPK FQAILKIVRN LEELGFEPID WDASPEPSQV AIKGGTDLMG LADATGMSWS EFRKANPKFR RTVSPPDASY QVQIPAPKVA QAKAYLDGPR AQKMAGGKRY RVRSGDSWWR IARRFDVPLT ALMRLNNTRS KMLHPGDSVL IPVSGEAARA RVAAQDGEYV VQRGDSLWEL ARRMDTTVTK LRRANNLQNT TLRVGQRLTI PGGSQKAKTR QIAQRRSNYT VKKGDTLWEL SRRFGLSLNT LVQANGIGRS SALQVGQKLY IPDRGRTTQV AKAREKAAHQ RLVRYTVRQG DNLWTIARRF GVSADALQDW NNLGKNELIH PGDNLRVYIQ
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