| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0083 |
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| Symbol | |
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| ID | 8417887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 112305 |
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| End bp | 114560 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036648 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003196963 |
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| Protein GI | 258404221 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAG ACCTGATTAT CGTTGAATCG CCGGCCAAGG TAAAAACCAT CCGCAAGTTC
CTGGGGTCCG ACTATCTTGT CGAGGCCTCG GTCGGACACG TCCGCGACTT GCCCTCAAGC
AATCTTGGGG TGGATGAAGA CAACAATTTC CAGCCCCAAT ACCAGATTAT TTCCGGAAAA
CAGAAGGTCG TCAGCCGCCT GAAAAGCGCG GCCAAAAAAG CCACGACCGT CTATCTGGCT
CCCGACCCGG ACCGGGAAGG GGAAGCGATT GCTTGGCATG TGGCCGAACT GCTCAAAAAA
ACAAATACCA ATCTCAAACG GATCCAATTC AATGAGATCA CGTCCCGGGC GGTCAAAGAC
GCCCTGGAGC ATCCCCGGGA TCTAGACGAA CGGCTGTTCT ATTCCCAGCA GGCCCGGCGC
ATCCTGGACC GCCTCGTCGG CTATAAAATC TCACCGCTTC TCTGGAAAAA GGTCAAGCGG
GGTCTGTCCG CCGGACGGGT CCAGTCGGTG GCCCTGCGGC TTATAGCCGA ACGCGAACGT
GAACGCCAGC AATTTGATCC TCAGGAATAC TGGGTCCTCA AGGCCCATGT CCAGGCCGCG
GCCCCGCCGC CGGTGGTCGC CGAATTGTGG AAAATCGGCG GCAAAAAACC CCATGTCGCC
AACGAGACCC AGGCCCTGGA AATAGAAAAG AAGGTCTCCG AAGCCGGTTT CCATGTCGAA
TCCGTGGAAG AAAAGGAACG CAAACGGCAC CCCAAGCCGC CGTTTATCAC CTCGACCCTC
CAGCAGGACG CCAGCAACCG GCTCGGGTTC GCCGCCAAAC GGACCATGCG CATCGCCCAG
CAGCTCTACG AAGGGCTGGA TCTGGGCGAC AAGGGCACGA CAGCGCTGAT CACCTACATG
CGCACCGACT CCGTGCGTAT CTCCAACGAG GCCCGCAATG CGGCCCAAAA ATGGATCGTC
TCCACCCTGG GCGAGGCCTA CTATCCCGAA AAGCCGCGCT ATTTCAAGAC CAAGGGGTCA
GCTCAGGACG CCCACGAAGC CATCCGCCCC GTCGATCCGA CCCTGACCCC CGGATCCATA
CAGTCCTACC TCTCCCGGGA GCATTTCCGG CTCTACAAAC TCATCTGGGA ACGGTTCATG
GCCTCGCAGA TGGCCCCGGC CCGGTTCTGG GATACCCAGC TCACCCTCGC CTCGGCCAAC
ACCTTGTGGC GGGCCAAAGG GGAACGGCTC ATCTTTGACG GCTACCTCCG GGTCTATTCG
GCCGACAAAT CCCAGGAAGA GGTCGAACTG CCCAAGGTCC AGGCGAAGGA CGCCCTGACC
CTGGAAAAAA TCGACAAAGA ACAGAAATTT ACCCAACCGC CGGCCCGGTT TTCCGAAGCC
TCGCTGGTGC GCAAACTCGA AGAGCTCGGT ATCGGTCGCC CCTCGACGTA TGCCCAGATC
ATCTCCACGT TGCTCGACCG CAACTACGTC CAGCTGGCCA AAAAGCAATT CGTGCCCACG
GAAATGGGCT TTGTGGTCGC CGACCTGCTC ACGGCGCATT TCCCGCAGCT CTTGGACGTC
GGCTTCACGG CGGAGATGGA AAAGAAACTC GACAGTGTCG CCGAGGGGGA CCAGGACTGG
ACGCAACTCC TGCGCGAATT CACCGAGAGC TTCTATCCCA CCCTGGAAAA GGCCGAACAG
GAGATGCAGC AGGTCAAGAC CGGGGTCGAA ACCGGGGTCA GCTGTCCCAA ATGCGGGAAG
CCGGTGGTCA TCAAATTCGG CCGCAACGGC GAATTTCTGG CCTGTACCGC GTATCCGGAC
TGCGACTTCA CCTCGAACTT CACCCGCGAC GAGGCCGGCA CTATCGTCAT CGTTGAGCCC
GAACCCCAGG AGCGGCAAAA AGTGGGCACC TGCCCCGAGT GCGGCCAGGA CCTCGTGCTC
AAAAAGGCCC GCACCGGCAG CCGCTTTATC GCCTGCACCG GCTACCCCAA ATGCAAATAC
ACCCAGTCCT ACTCCACGGG CGTCAAATGC CCCAAACAAG ACTGCCCGGG CGAACTGGTG
GAAAAAAGCT CCAAACGGGG CAAGGTCTTC TACGCCTGCA ACCAGTATCC GGACTGCAAG
ACCGCCTATT GGAACTGGCC CATCGCCGAA GAGTGCCCTA CCTGCGGCTC ACCGATCCTC
GTGCGCAAGG AGACCAAGGC CCGTGGCGAG CATGTCGCCT GCCCGGAAAA GGGCTGCGGC
TATTGGCGGG AATTGCGCGA CGACGAAAAA CACTAG
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| Protein sequence | MSTDLIIVES PAKVKTIRKF LGSDYLVEAS VGHVRDLPSS NLGVDEDNNF QPQYQIISGK
QKVVSRLKSA AKKATTVYLA PDPDREGEAI AWHVAELLKK TNTNLKRIQF NEITSRAVKD
ALEHPRDLDE RLFYSQQARR ILDRLVGYKI SPLLWKKVKR GLSAGRVQSV ALRLIAERER
ERQQFDPQEY WVLKAHVQAA APPPVVAELW KIGGKKPHVA NETQALEIEK KVSEAGFHVE
SVEEKERKRH PKPPFITSTL QQDASNRLGF AAKRTMRIAQ QLYEGLDLGD KGTTALITYM
RTDSVRISNE ARNAAQKWIV STLGEAYYPE KPRYFKTKGS AQDAHEAIRP VDPTLTPGSI
QSYLSREHFR LYKLIWERFM ASQMAPARFW DTQLTLASAN TLWRAKGERL IFDGYLRVYS
ADKSQEEVEL PKVQAKDALT LEKIDKEQKF TQPPARFSEA SLVRKLEELG IGRPSTYAQI
ISTLLDRNYV QLAKKQFVPT EMGFVVADLL TAHFPQLLDV GFTAEMEKKL DSVAEGDQDW
TQLLREFTES FYPTLEKAEQ EMQQVKTGVE TGVSCPKCGK PVVIKFGRNG EFLACTAYPD
CDFTSNFTRD EAGTIVIVEP EPQERQKVGT CPECGQDLVL KKARTGSRFI ACTGYPKCKY
TQSYSTGVKC PKQDCPGELV EKSSKRGKVF YACNQYPDCK TAYWNWPIAE ECPTCGSPIL
VRKETKARGE HVACPEKGCG YWRELRDDEK H
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