| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0082 |
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| Symbol | |
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| ID | 8417886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 109380 |
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| End bp | 112220 |
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| Gene Length | 2841 bp |
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| Protein Length | 946 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645036647 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_003196962 |
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| Protein GI | 258404220 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGGTG GATCGGGGTT GAGTCATTTC GGGGCGCTGG TGGCCTGTCT TCTGGTGCTG
CTCGGGATGG TGCCCTCTGT TCCGGCTGCG GACAACGGCT TCGCCGCCCG GGAGCAATGG
GCAGTCGGCA CGGCGCAATT CGTTGTCGCC CCGGACCCGC ATTGGCCGCC GATTGAATTT
TTCGACGCCC AGGGCCGTTA CCAGGGCTTG GCCGCCGATT ATCTCCGCCT GGCCGCCAAA
GAACTCGGCC TGTCGTTGCG GGTCCGGCGG CTGGACAATT GGGCTCAGGC CGTCGACGCC
GTGCGCAGCG GCGAGGCCGA TGTGCTGGGG GCGGCCCGCA AGACCGCAGA ACGGGAACGC
TTCGCCCGCT TTACCCAGCC GTTTTATGAG GTGCCCACTG TGCTGGTGGT TCGCCAGGGG
GACCGGACAA TCACCTCTCT TGGCGATCTT GAGGCCGTTG GAGCCGTGCG CGGGTATGCG
GTGGCCGAGT ATCTGCGCCG CACTGCCCCG GAATTGACCC TCCATCTGGT ACCCGATACC
GCCACCGGTC TGCGCCAACT GTCCCTCGGC CACCTTCCGG CCCTGGTCAC CGAACTCCCG
GCCGCGACCT TCCTGCAGAG CAAACTGGGG CTGAGCAATC TCCGGTTTGT CGAGACCCTG
GACTACAGTT ACCCCCTCTC CTTTGCCGTC CGGCGTGACG CGCCCGGACT TTACACCCGT
CTCGAAGCGG CTCTGGCCGG TATTGCAAAC GAGCAACGCC GCGCCCTGGA GCGGAAGTGG
ATCGGGCTGG ACCACAGCGA ACTGCTGCGC GATTCCTGGT TTTGGAAACA GGTTTTGGGT
GCGACCCTGC TCGTGGTCCT GGTCGTGTTT GTTCCCCTGT ACGGACTGCA ACGCGAGAAG
ATCCGCCGGC GGACGCGGCA GTTGCAGACC TCGGAAGACA AGTTTCGTTC CGTTTTCGAG
CAATCGCACC AGCTGATGGC GCTGTTGAGC GTGGACGGGA CCTTGATTGA GGCCAACGAC
CGGGCTCTGG AGTTCATGGG GGCTGACCGG GCGTTTTTGC GGGGCCATGA GCTGACCGCC
CTGCCGTGGT GGACGGGGGT GGAGGACGAC AACGAGGAAA TGGCGGCGGC CATCCGTCTT
GCGGCCACAG GTGAGGTGGT CCACGGCCGG ACCCGGAATA TTGCGCCGAG CGGCAGAACG
GTCTGGATCG ATTATTCGGT CAAGCCGGTT TTCGGCGAGG AAGAGACACC GCACTATCTG
GTCGTTGAAG GACGGGACGT CACCGCGTAT CTCCAGGCCA AACAGGCGCT GGAGGAAAAC
GAGCGCATGC TCTCGACGCT GCTCGCCAAC CTGCCGGGGA TGGTCTACCG ATGTTCCGAC
GACCCGCGCT GGAAGATGGA ATATGTCAGC CGCGGGTGTA TGGATTTGAC GGGCTACGAC
GAGGCCACGC TCACGACCCG CATGGACCCG GAATACGGTG ACCTTATCCT GGACGAAGAC
AAGCCTTTTG TCCTGGAATC TGTGGAGCAG GCCTTGACCT CAAAGGAGTC GTTTCAAGTC
ACGTATCGCA TCCAGGACGC CGATGGCGTG GTGAAATGGG TCTGGGAACA GGGACGCGGG
GTCTGGTCCG AGGGGGGCGA TCTGGAAAGT ATTGAAGGGT TTGTGACCGA TGTGACTGCC
CAACGCCAAT TGGAGGAGCA GTTGCGCCGC TCGCAGCGCC TGGAGTCCGT GGGACGGCTG
GCGGGCTGGG CCGCCCACGA TTTCAACAAT ATGCTGACCC CCATTTTGGG GTATGCCGAG
ATCCTGTTGG CCGGGGCCCC TGAAGGGGGC AAAGAGGCCG CCAAGCTGGA ACAGATCCAT
GCTGCGGCCG AGCGGGCTCG GCAATTGGCC CGGCAACTCC TCGCTTTCAG CCGCAATCAG
GTCCTGGCCA AAGCCCACCT GGATCTCCGG GAAATGGTCC AGGGGTTTTG GGATATCCTG
AGCCAGGGCG TGCGGGAGGA CATCTTTCTC GAACTCACGC TCAGTGAAGA GCCGTGCCGG
GTCATGGGTG ACGCCCACCA ACTCGAGCAG GTGCTCATGA ATCTCGTGCT CAATTCCCAG
GACGCCATGC TTGAGGGGGG CTCGATCCAG GTCGCGGTTG CCCCGATCGA ACTCGACGCT
GGCTATCAAA AGCTCCATCC GGAGATCGCT CCCGGCAGGT ACATCCAACT CAGTGTGGCT
GACACCGGCG TGGGGATGGA CCGAGAAACC CAGCGCCAGG CCTTTGACCC CTTTTTTACC
ACCAAGGGCG AAGAAGGGAC CGGTCTGGGA TTGTCCTCAG TGCACGGCAT CTTGAAACAG
CACGGCGGGC ACGCCGAAAT CTATTCCGAG CCGGGCGCGG GTACGGTGGT CAAACTCTTT
TTGCCGCGGG TGGATGAGGA CTCCAGTCGC AGTGAGGGAC CGCAGACCCT GCAGGAGCAG
ACATTTGTCT CCGGCAGTGA GACGGTGCTC GTGGTCGAAG ATAATGAGAT GGTCCGGGAG
TTGACCTGCG AGGTCCTGTT TTCGCTCGGC TACAGCGTCG TCTCCGCCGC CGAGCCCCGG
GAAGGGATGC GGGTGGCCAG CCAGACCGAG GAGGAGATTG CCTTGCTGGT CACCGATGTG
GTCATGCCGT ATATGGACGG CAGGAAATTG TACCAAGAGC TGCAGGCCGA CCGGCCCGGA
TTGCGCGCTT TGTTCATCTC CGGGTACACT GACAATCACA TCGCCAATAC CGGGGGCATG
GAAGCGGGCA CGGCCTTTTT GCAAAAACCG TTTACCAGTC AGGAACTGGC CCGGAGCGTG
CGACAGGTGC TTGACGCCTG A
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| Protein sequence | MRGGSGLSHF GALVACLLVL LGMVPSVPAA DNGFAAREQW AVGTAQFVVA PDPHWPPIEF
FDAQGRYQGL AADYLRLAAK ELGLSLRVRR LDNWAQAVDA VRSGEADVLG AARKTAERER
FARFTQPFYE VPTVLVVRQG DRTITSLGDL EAVGAVRGYA VAEYLRRTAP ELTLHLVPDT
ATGLRQLSLG HLPALVTELP AATFLQSKLG LSNLRFVETL DYSYPLSFAV RRDAPGLYTR
LEAALAGIAN EQRRALERKW IGLDHSELLR DSWFWKQVLG ATLLVVLVVF VPLYGLQREK
IRRRTRQLQT SEDKFRSVFE QSHQLMALLS VDGTLIEAND RALEFMGADR AFLRGHELTA
LPWWTGVEDD NEEMAAAIRL AATGEVVHGR TRNIAPSGRT VWIDYSVKPV FGEEETPHYL
VVEGRDVTAY LQAKQALEEN ERMLSTLLAN LPGMVYRCSD DPRWKMEYVS RGCMDLTGYD
EATLTTRMDP EYGDLILDED KPFVLESVEQ ALTSKESFQV TYRIQDADGV VKWVWEQGRG
VWSEGGDLES IEGFVTDVTA QRQLEEQLRR SQRLESVGRL AGWAAHDFNN MLTPILGYAE
ILLAGAPEGG KEAAKLEQIH AAAERARQLA RQLLAFSRNQ VLAKAHLDLR EMVQGFWDIL
SQGVREDIFL ELTLSEEPCR VMGDAHQLEQ VLMNLVLNSQ DAMLEGGSIQ VAVAPIELDA
GYQKLHPEIA PGRYIQLSVA DTGVGMDRET QRQAFDPFFT TKGEEGTGLG LSSVHGILKQ
HGGHAEIYSE PGAGTVVKLF LPRVDEDSSR SEGPQTLQEQ TFVSGSETVL VVEDNEMVRE
LTCEVLFSLG YSVVSAAEPR EGMRVASQTE EEIALLVTDV VMPYMDGRKL YQELQADRPG
LRALFISGYT DNHIANTGGM EAGTAFLQKP FTSQELARSV RQVLDA
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