| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0074 |
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| Symbol | |
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| ID | 8417878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 95582 |
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| End bp | 97477 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036639 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003196954 |
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| Protein GI | 258404212 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.384971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGCA CGGCCATTCT GGATTCCACC ATACTTCGCC AAGAGATCCA GGCCTCCCAT
GCCCGGTCCA AGGAATATGG TGTCAGCCGC ACGACGCGCA AAAACCAGGT CAAGCTCACG
CCCCTGGAAC TCAGCCAGCG TCAGGCCCAG AACAAAATTT TCCTGGAAGC GGTCATCGCC
CAGCTCTCCG AACTCTTTGA CCTTTTAAGC CCCGACGATT TCATGGTCGC GGTCGTCGAC
GGTGAGGGGT ACATCCTGCA CATGTTCGGC AGCGACAATA TCAAGGCCAA ATTCGCCGAA
CGCAATTGCG CCCCGGGATA TCGGTGGACA GAGCGCGATG TGGGCACCAC CGCCATCAGC
CTCTGTCTGG AGCGCCGCAT CGCCGTCCAA CTCAACGACA AGGACCATTA TTGTCAGCGG
GCGCACGGCT TCACCAGTTC CGCAGCTCCG GTCTTCGGCC ACGCCGGCAA TTTGCAGGGT
ATTCTTGTGG TTTCCGGGAA TTCGCAACTG GTCCACCCCC ACACCCTGTG CATGATTTCC
TCTGCAGCGC GCTCCGTAGA GCGGCAACTG CGCATCCTGC GCCGCAATTC CGAACTGGCC
ATGCACATCG GCCTCTTGGA CGCGGTTCTC GAGTCCACGA CCTCGGGCCT GATGGTCATC
GACAGTCAGG GCGTTATCTG GCGGGTCAAT CGCAAGGGGG GGCAGATTCT AAAAAAGACG
GATCTGGCCG GACAGGAAGT CTCGGTCTTG CAGGGATTGG ACCTTGATAT CGAGGACATC
CGGGCGAACC CGAATGCCTG GGTCAACCGG GAATGCACCC TGAAAAACGG CCGCCAGAAT
ATCCACATCC TGTTTTCGGC CCAGCCGGTG CTGGCCGGCG ATCAATCCAT GCTCGGCGTG
GTCCTGGAAT TCGAACCCAT CGATTCGGTG CGCAAACTGG CCAATAATAT TGCTGGAACC
AAAGCCTTCT TCACCTTCGA GAGCATGATC GGCTCCAGCG AATCCTTTCG TCGGGCCCAG
GAGATGGCCA AACGCGCGGC CCATTCCGAT TCCACCGTCT TGCTCCGCGG CGAAACCGGA
ACCGGCAAGG AACTCTTCGC TCAGGCCATT CACAACGCCA GCCGTCGTCG CAGCGCCCCG
TTTGTTCCTA TCAACTGCGG GGCGATTCCG GGCGAACTCC TGGAAAGCGA ACTCTTCGGC
TATGTCGACG GCGCCTTCAC CGGCGCTCAG AAAGGCGGCC GCCCCGGGAA ATTCGAACTC
GCCCACCGCG GCACCATTTT GTTGGACGAA ATCGGGGATA TGCCCCACGA TATGCAGGTC
AAACTCCTGC GCGTCCTGCA AACCGGCGAG GTCTACCGCA TCGGGGCCCG CAAGCCGACC
CTGGTCGACA CCCGGATCAT CGCCTGCACC CATGTTGATC TCGGCAAGGC GGTCGCCGCC
GGACGCTTCC GTGAAGATCT CTACTACCGG CTCAACGTCC TGCCCATCGT CATCCCGGCC
CTGCGTGAAC GGGGACGGGA CGATATCCTG GCCTTGACCG AATTCTTCCT CTCCCGCAAC
CGGGTCACCC CTCCACAGCT CACTGTCGGC GCTGTCAAAG CCCTGGAGAA CCATCCCTGG
CCGGGCAATG TCCGGGAACT GGAAAACACC ATCCAACGCG CCCTGCACCT GTGCGAAGAA
AATGAAATCG ACGCGGCTTG CCTCGGGGTT CCCGAAACCG CTGCCGCGGC CTCCAGCTCC
ACGCCCCGCG GGACGCTGGA AGAAATCGAG CGCTTGGCCA TCGAGCAGAC CCTCGAGGAT
ACCAAGGGCA ATATGGCGGA AACCGCCAAG ACCCTCGGCA TTTCCCGGGC CACGTTGTAC
CGGAAAGTCA AACGGTATTC GCTGGAAACA GGGTAG
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| Protein sequence | MECTAILDST ILRQEIQASH ARSKEYGVSR TTRKNQVKLT PLELSQRQAQ NKIFLEAVIA
QLSELFDLLS PDDFMVAVVD GEGYILHMFG SDNIKAKFAE RNCAPGYRWT ERDVGTTAIS
LCLERRIAVQ LNDKDHYCQR AHGFTSSAAP VFGHAGNLQG ILVVSGNSQL VHPHTLCMIS
SAARSVERQL RILRRNSELA MHIGLLDAVL ESTTSGLMVI DSQGVIWRVN RKGGQILKKT
DLAGQEVSVL QGLDLDIEDI RANPNAWVNR ECTLKNGRQN IHILFSAQPV LAGDQSMLGV
VLEFEPIDSV RKLANNIAGT KAFFTFESMI GSSESFRRAQ EMAKRAAHSD STVLLRGETG
TGKELFAQAI HNASRRRSAP FVPINCGAIP GELLESELFG YVDGAFTGAQ KGGRPGKFEL
AHRGTILLDE IGDMPHDMQV KLLRVLQTGE VYRIGARKPT LVDTRIIACT HVDLGKAVAA
GRFREDLYYR LNVLPIVIPA LRERGRDDIL ALTEFFLSRN RVTPPQLTVG AVKALENHPW
PGNVRELENT IQRALHLCEE NEIDAACLGV PETAAAASSS TPRGTLEEIE RLAIEQTLED
TKGNMAETAK TLGISRATLY RKVKRYSLET G
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