| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0072 |
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| Symbol | |
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| ID | 8417876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 92792 |
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| End bp | 94090 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645036637 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_003196952 |
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| Protein GI | 258404210 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.625979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTGAGA TTTCAATGTT TGCCTTGGGG ACGCTGGTCG TATTGCTGAG CTTCGGCGTT
CCCCTACCGT ATTGTTTCGG CGGTGCCTTG ATGGTCATGC ATCTCTTCGG GGGAGCCACC
ATGCGCGGTA CCATGTTGTG GGGCTTCAGC CAGCTGGCCA ATCCGGTGCT TTTGTGTATC
CCCCTCTTCG TTTTTGCCGG CGCGATCATG AGTGAAAGCG GTATCGCTTC GAGTCTGCTG
AAATTTGTCA ACTTTTTTGT CGGCCGCATA CGCGGCGGCC TTGGGGTGGT TGCTTCGGTC
AGCTGCGCCA TTATCGGCGC CATCTCGGGC AGCGGGCTGA CCGGGATTGC GGCCACCGGC
CCCTTGCTTA TTCCGGAAAT GGCCGAGCGC GGCTATCCCC GTGGTTACGC CACCGCTCTG
GTTGCCAACT CCTCGATCCT CGGCCTGCTT ATTCCGCCTA GCGTGACCAT GATTATTTAC
GGCTGGGTCA CGGACACCTC GATTCTGGCC TGTTTCCTGG CCACAGTCGG TCCGGGCCTG
TTGATCACCT TCTTGTTTGC CTTGGTCAAC ATGTACCTCT CGCGCAATTT CCCGCTCATT
CTTGAAGAGA AAAAGACGTG GCCGGAAAAG ACGCGCGAAG GCGTGACACT GACCTCGCGG
GCACTGCCGG CGCTGATCAT GCCGGCGATC ATCCTCGGCG GCATCTACGG CGGCATCATG
ACCCCCACAG AAGCGGCCGC CGTGGCGGTT GTCTACGCCA TCCCTGTTGG GGTGCTCGTT
TACAAAGGAT TGACCTTCAA CACATTTCTC CGGGCGGCTA AGGACTCCGC GACATCGGTC
GGCGCGATCA TGATCATGAT TATCTTCAGC CTCATGCTCA GCCAGATCTT TGTCATGGAG
CAGGTCCCCC AGGCCCTGGT CGAAGGGATC TTCAATATCA CTGACAACAA GGTGTTGTTG
CTCGTTCTGG TGAATTTCCT GCTCTTTTTC ATCGGAATGA TCGTCAACGA CGTCACGGCC
ATCATCCTCA CAGCACCGTT GTTGCTGCCC CTGATGAACG CCATCGGCGT CTCGCCCATC
CAGTTTGCGG CCATTATGGG CGTGAACACG GCCATGGGCG GGGTGACTCC TCCCTACGCC
AGTATCCTCT ATCTCGGGAT GCGTATCGGC AACGTGGAGT TCAGTGAAGT GTTTAAACCG
GCGATGACTT TGATCATTTT CGGTTACGTC CCAGTAGTCT TTTTGACCTC TTTCTGGCCC
GAGCTCTCGC TCTTTCTGCC GAGTCTCTTG GGCTACTAA
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| Protein sequence | MIEISMFALG TLVVLLSFGV PLPYCFGGAL MVMHLFGGAT MRGTMLWGFS QLANPVLLCI
PLFVFAGAIM SESGIASSLL KFVNFFVGRI RGGLGVVASV SCAIIGAISG SGLTGIAATG
PLLIPEMAER GYPRGYATAL VANSSILGLL IPPSVTMIIY GWVTDTSILA CFLATVGPGL
LITFLFALVN MYLSRNFPLI LEEKKTWPEK TREGVTLTSR ALPALIMPAI ILGGIYGGIM
TPTEAAAVAV VYAIPVGVLV YKGLTFNTFL RAAKDSATSV GAIMIMIIFS LMLSQIFVME
QVPQALVEGI FNITDNKVLL LVLVNFLLFF IGMIVNDVTA IILTAPLLLP LMNAIGVSPI
QFAAIMGVNT AMGGVTPPYA SILYLGMRIG NVEFSEVFKP AMTLIIFGYV PVVFLTSFWP
ELSLFLPSLL GY
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