Gene Dret_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0065 
Symbol 
ID8417869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp84795 
End bp85904 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content58% 
IMG OID645036630 
Productpyridine nucleotide-disulfide oxidoreductase family protein 
Protein accessionYP_003196945 
Protein GI258404203 
COG category[C] Energy production and conversion 
COG ID[COG1252] NADH dehydrogenase, FAD-containing subunit 
TIGRFAM ID[TIGR03169] pyridine nucleotide-disulfide oxidoreductase family protein 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGGT TGGTCCTTTT AGGTGGCGGG CACGCTCATA TGACAGTCAT GGCCAGCCTG 
AACGAGTTTC TGGACCGTGG ACACGAAGTA CGTGTCGTTG GGCCGGAGCC GTATCACTAT
TATTCCGGTA TGGGGCCGGG GATGCTCGGC GGCCATTATA CGCCAGAGGA GATCCGTTTC
GATATCCGGC GCATGGTTGA GAGCAAGGGA GCGAGCTTTG TCGAGGACAA GGCCGAGCGG
ATCGATGCGG CCTCCCGCGT GGTCCATCTG GCTTCAGGGC AACACCTGGA ATACGATGTT
CTGTCCTGTA ATACCGGCAG CGTCGTTGAT CAGCGCTTGG CGGCCCCGGA CGCGACGAAT
GTGTATACTG TCAAACCGAT CGCCAATCTC CTAGCGGCGC AAAAGCGGAT CAAAGATTTG
GCCTCTTCCA AGAGTGAACT CCGCATCGGT GTTGTCGGTG GTGGCCCGGC AGCGTTGGAG
GTCGCCGGCA ATGCCCTGAG TTGGGCGCAC CGGGTCAACG CCTCCTCGCC GAAGGTGACC
GTATTCGGAG GCAAGGAATT TTTGCGCCGC CATCCGGGCA AGGTTCGCCA GTTTGCCATC
ATGTCCCTGG AACAACGCGG AATCGAGTTG GTTCAGGGCA GTTATGTGGA CAAAGTGACC
GGCTCGCGTA TTGTTCTGGA GGACGGTTCC AGCGCTGATG TCGATCTCGT TTTTTTGGCT
CAGGGTGTGC GGCCTTCTCC CTTGTTCCGG GCCTCGGACG TAGCCGTGGG GCCAAACGGA
GGGCTGGCCG TCAACGAATA TCTCCAATCC ACCGAAGAGC CATCCATTTT CGGGGGCGGC
GACTGCATCC ATTTCGAGCC GGAGCCGCTG GACAAGGTCG GTGTCTATGC TGTGCGGGAA
AATCCGATTT TGAAGGCCAA TCTCATGGCC CAACTTGAGG GCAAGGAACT AACCCCCTTT
GATCCTGGGG ACGGGTATCT GCTCATTTTC AACCTTGGCG ACGGCACCGG CATCTTCTGG
CGCAAGAAGA CCATCTTTCA CGGTCGCCCG GCTTTCTGGC TCAAAGATTT CATCGACAGG
CGGTTCATGA AGCGGTTCCA AAAGGCGTGA
 
Protein sequence
MARLVLLGGG HAHMTVMASL NEFLDRGHEV RVVGPEPYHY YSGMGPGMLG GHYTPEEIRF 
DIRRMVESKG ASFVEDKAER IDAASRVVHL ASGQHLEYDV LSCNTGSVVD QRLAAPDATN
VYTVKPIANL LAAQKRIKDL ASSKSELRIG VVGGGPAALE VAGNALSWAH RVNASSPKVT
VFGGKEFLRR HPGKVRQFAI MSLEQRGIEL VQGSYVDKVT GSRIVLEDGS SADVDLVFLA
QGVRPSPLFR ASDVAVGPNG GLAVNEYLQS TEEPSIFGGG DCIHFEPEPL DKVGVYAVRE
NPILKANLMA QLEGKELTPF DPGDGYLLIF NLGDGTGIFW RKKTIFHGRP AFWLKDFIDR
RFMKRFQKA