| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0059 |
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| Symbol | |
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| ID | 8417862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 77997 |
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| End bp | 79796 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036623 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_003196939 |
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| Protein GI | 258404197 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATT GGGGATTGGT GTGTTTCGTG GCCATAGTAC AGCTCATGAT CGGGGTGGGT
TCGCTTTGCG CCCAGACGGC TGAGGCTCAA GACAAGCCTG TCGTTGGGGT CATTCTCCCC
TTTTCCTCGG CGTTTGAGGA TATTGCTGTT GAGCAGCAGC GGGCGGTGGA ATTGGCCCTG
GCCGAGAGCG GCTCGGCGTT CGAGATCGTC TTCAAGGACG GCGGGGCTGA CGTGGACACA
GCGGTGCAGG CCTTTCAGGA TCTGGTGCGT TCGCAAGAGA ACCTGGCGGC GGTTGTCAGC
TGCTCGAGCT GGGCTTCAAG CGCGATCCAT CCGTTGGCCG CTGAAAAGGA CATCTTTCAT
GTCGCCATCG GCAGCGCGGC CTTGAAGCGA ACCGAACCGG GGCACACCAT CCGCTTGACT
GTGGGTGTCC AGCAGGAACA GGAACAATTG GCCGCCTATT TGACGGACTT TGAACGGATC
GCGGTCCTGG CGATGGACAA CAATCTTGGC TCCAGCTGGA TCCGTATGCT TGAGGACCGT
TTTCCAAAGC AGGTTGTGGC CGCGCAGGAG TACAATCCGC AGCAGATGGA TATTGCGGCC
CAACTCGCGA CCATCAAGGC CCGGGACTCT GAGGCCCTGG TGCTTATCAG TGCCGGGGAA
GCGGCCACCA TCGCCAAACA GGCGCGGCAG GCCGGCATCA AGGCCCAGCT AGTCGGCACA
CGCCCCATCC AGCGCGCGGA GGTGTTGGCG GCCTCAGCCT TCACGAACGG TCTCGTCTAT
ACCTACCCTT CATACAATCA GGACCATCCC TTTATGAGCG CGTTTACGGA TCGCTATGGT
CTTGAGCCCG GATTTTTTGG GGTCGAGGCC TATGATCTGT GTACCACCCT GAGCCGGGCC
CTGGAGCAGG GACGGCAGAC GCCAAAAGCG CTTTTCGAGT GGTATGCCGG AAACACGTTC
ACCGGCGCCC TGGGAAAAGT GACGTTTGCC AATGATGGGG ACGCTTCGTA TCCGTATATT
TTCAAAAAAG TGACAGAATC CGGCTTCCGG GTAGCCGAGT TCCAGTTCCC CATGCTCTTG
ACGCAAACGG CCCAGGAACT CAACGCGATT TTCAAGGATA TGGACCGAAG TGTGGCCGCC
GCTGCCGAAC AGCTTTCCAC GACAGGCCTG CGGGGAGACC GGGCCTCGGC CATTCTGGAA
ACACTCTTCA ACGAGAATCA GTATGCCTAT AATTGCGTAA CAGTGGATGC CACGGGCACT
ATCGTCAATG TGGCGCCCAA GCAATACAGT TCGGTGATCG GCGAGGATAT CAGCGGTCAG
GAACAGATCA TCCGGCTGCA CGAGACGCAC CAGCCGGTGC TCAGTCAGGC CATCAAAATG
GTCGAAGGCT TTGTGGGGAT TGACCTGGAA CACCCGGTCT TCGATCAGGA CGGCGGGTTT
ATCGGATCGG TCAGCGTGCT CACCCAGCCA GATTTTTTCG GGAGCATCAT TTCCCGCAAA
GTCCATAATT TTCCGGTGGA GATCTTTGTC CTGCAACGCG ATGGGACGAC TATCTATGAT
GTCAATGCCG AGGAGATCGG CAAGAACGCT TTTGCTGACC CAATCTACGA TGCGTTCCCA
TCGCTCAAGC GGATAGCCCG GAAGATGGTC TCTCAGGCCG AGGGCGAGGG GACGTACCGC
TTTCAGGACC GACATATGGA ACACGCCGTA GCGAAACAGC TCCTCTGGAC GAGTATTGGC
CTGCACGGAA CCAACTACCG CTTGGCACTG ACCTATGGGG CTGGGGAGAT TGAGGATTGA
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| Protein sequence | MKNWGLVCFV AIVQLMIGVG SLCAQTAEAQ DKPVVGVILP FSSAFEDIAV EQQRAVELAL
AESGSAFEIV FKDGGADVDT AVQAFQDLVR SQENLAAVVS CSSWASSAIH PLAAEKDIFH
VAIGSAALKR TEPGHTIRLT VGVQQEQEQL AAYLTDFERI AVLAMDNNLG SSWIRMLEDR
FPKQVVAAQE YNPQQMDIAA QLATIKARDS EALVLISAGE AATIAKQARQ AGIKAQLVGT
RPIQRAEVLA ASAFTNGLVY TYPSYNQDHP FMSAFTDRYG LEPGFFGVEA YDLCTTLSRA
LEQGRQTPKA LFEWYAGNTF TGALGKVTFA NDGDASYPYI FKKVTESGFR VAEFQFPMLL
TQTAQELNAI FKDMDRSVAA AAEQLSTTGL RGDRASAILE TLFNENQYAY NCVTVDATGT
IVNVAPKQYS SVIGEDISGQ EQIIRLHETH QPVLSQAIKM VEGFVGIDLE HPVFDQDGGF
IGSVSVLTQP DFFGSIISRK VHNFPVEIFV LQRDGTTIYD VNAEEIGKNA FADPIYDAFP
SLKRIARKMV SQAEGEGTYR FQDRHMEHAV AKQLLWTSIG LHGTNYRLAL TYGAGEIED
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