| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0057 |
|---|
| Symbol | |
|---|
| ID | 8417860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 74991 |
|---|
| End bp | 76643 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645036621 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_003196937 |
|---|
| Protein GI | 258404195 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGC TGATCGACGT CCACTCCGAG CTCCTGCCCG TCTTTCTGGA GCAGATCGAA
GACGCCATCG CCATCGTCAA CACCGAACAC ATCTATATCT TCGCCAATGC CGCCTACTGC
CGACTTCGGA GAACAGACCC GGCGACTATC ATCGGCAAGC ACGTCCGGGA GATTGTGGGC
GAGGATTTCT ATCAGCTCCT GGTCCGGGAA AAGCTTGAAG AGGTCTTGCA GGGGGCCCAG
GTCCAGTACG AATCCCCCGT CACGTCGGAC GCTGGGCACA CTTCGCATCT GGCAGTCAGC
TACTTTCCCC TTCCCGACGC CACCGCTCCG GCCTACGTCG CCGCGGTCCT GCGCGACATT
TCCGCGCCCA AAGAGCAGGA GGAGGTCCTG CGCTTTCTGG TCGAAAACAT CAACGAAGTC
TTTTGGCTAC GCGACCTGAA CCAGGACCGG GTCATTTATG TCAGCCCGTC GATCAGCTCA
GTCTTCGGCA TCACGCCCGA GGATATGTAT TCCGACAGTC GCGCCTTCAT GCGCATGATC
GACGAGCGGG ATTTGGCCAG GGTGCAGCGG GCCTTTCAGG CTGTGCGCAA CGAGCGTATC
GACTTCAACG AGGAATACCG TATCGTCCAC CCCGAAAAAG GAGTGCGCTG GATCCACGCC
CGGACCTACC GCTTTGAAAG CGATCACAAA AAACTCTTCG TCGGCACGGC AGAAGACATT
ACCGAGCGCA AGGTCCAGGA AGAACATGTC CTCAAGAGCA AACAGCACGT CGAAGCTCTG
TACCGCGGCA TCCCGTTGCC GATCTTTACC TGGGAGCGCC GCAACGACGA CTTCATGCTC
TCGAGTTTCA ACACCGCGGC CGTGGAAATG ACTCAGGGCA AAGCCAAGCA CCTGAAGGGA
CGCTGGTTGT CCGAGGTCTA CCGCGACCAG AACCCCCAGG TCATCGAAGA CATCCACCGC
TGCTTCGAGT CTCGATCCAA CCTGCGCCGC CAGATGTCCT ACACCCTCGT ATCCACTGGC
GAAGAGAAAT ATATCGAGGC CTCCTACGTC TATGTTCCGG ACCGCCACGT CATGGCAATG
GTCAACGATA TCACCCACCA ACAACAGTAC CAGGAACATC TTAAACGGCT TTCGCGGACC
GACGAGTTGA CCGGCCTGTT CAACCGGCGC CATTTCATCA CCCTGATGCA CAAGGAATTC
AGCCGGGCCC GCCGCACGCA CGAGAGGCTG ACCCTGGCCA TGCTGGATAT CGACCATTTC
AAAGACGTGA ACGACAAATA CGGCCACGAC GTTGGCGACC ATGTCCTGCA GCATCTCGGC
CGCATTCTGC GCGAGGACGT CCGGCCCTAC GATATCGCCG CGCGATACGG CGGCGAGGAA
TTCGCCATCT GCTTCCCGGA CACCGACCTC AGCCAGGCCG ATCACATCTG CGAACGCCTG
CGCACCTTGT GTGCTGCAAG CGAGGTCTCC CGCAACGGCG GGACCATCGG CTTCACCGTG
AGCTTTGGTC TGAGCGAACT CCGGCCGGAA CACGAGGACC TTGATGGCTT GCTCAAATCC
GCGGACAACG CCCTCTACGC AGCCAAGGCC AACGGCCGCA ACCGCATTGA GCACGACGTG
GTCTATTGCG ACCAGCAAAC GGGCTGCTCA TAG
|
|---|
| Protein sequence | MTQLIDVHSE LLPVFLEQIE DAIAIVNTEH IYIFANAAYC RLRRTDPATI IGKHVREIVG
EDFYQLLVRE KLEEVLQGAQ VQYESPVTSD AGHTSHLAVS YFPLPDATAP AYVAAVLRDI
SAPKEQEEVL RFLVENINEV FWLRDLNQDR VIYVSPSISS VFGITPEDMY SDSRAFMRMI
DERDLARVQR AFQAVRNERI DFNEEYRIVH PEKGVRWIHA RTYRFESDHK KLFVGTAEDI
TERKVQEEHV LKSKQHVEAL YRGIPLPIFT WERRNDDFML SSFNTAAVEM TQGKAKHLKG
RWLSEVYRDQ NPQVIEDIHR CFESRSNLRR QMSYTLVSTG EEKYIEASYV YVPDRHVMAM
VNDITHQQQY QEHLKRLSRT DELTGLFNRR HFITLMHKEF SRARRTHERL TLAMLDIDHF
KDVNDKYGHD VGDHVLQHLG RILREDVRPY DIAARYGGEE FAICFPDTDL SQADHICERL
RTLCAASEVS RNGGTIGFTV SFGLSELRPE HEDLDGLLKS ADNALYAAKA NGRNRIEHDV
VYCDQQTGCS
|
|---|
| |