| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0034 |
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| Symbol | |
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| ID | 8417836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 37283 |
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| End bp | 39274 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645036597 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003196914 |
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| Protein GI | 258404172 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAAAA AAACGCGGCA GCGCGTGTGC ATCGAGCGGG TTCGTCCCAG TGTCGACGGG
GGCCGTTTTC CGGCCAAACG GGTCCAGGGC GAAACCGTGA CCATTCAGGC CGATATCTTT
ACCGACGGCC ACGATACCCT CGCGGCCGAG GTACTCCTGG CCCTGCCGGG TGAACGGCAC
TGGCAGCGGC ATGCCTTGCA AGCACGGCCG AACGACGTTT ACACGACCTC CATTTTTCTG
GAACACCGCG GTGAGTATGT CTTTCGCATC CAGGCTTGGC GTAATGTTTA TCAGACCTGG
CTCAGTGACG TCCTGAAGAA GTACGACGCT GGACAGGATG TTGCCGTTGA ACTCCAGGCC
GGCGGCGAGC TGGTGCGCGC AATGAGCGAC CGACTCAACG GCGCGGATCA GGCCTTTGCC
CTGGAACAAG CCGGAGTCAT GGAGCGCTTC GCCGATTCTT CCCCGGAGGA CGCTTTTGCA
GCGGCCCAGG GGGACCGACT GCGCCGACTG CTGCGCTACG CTGGGCGTAG CGAGGAACAC
GGCGGTCTGT CACCCCGCTT TGTCATTGAT GTCGACCGTC CGCGCGCCGG GTTCAGCGCC
TGGTATGAAT TTTTCCCCCG GTCGTTCGGG GAATTTCCCG GCGCACACGG CACCTTGACC
GACGCCGCTG CCATGCTGCC CCACATCGCC CATATGGGGT TCGATGTCGT GTATTTGCCG
CCGGTGCACC CCATCGGACA CACTTTTCGC AAAGGGCGCA ACAACGCTCC CGAGGCCGAG
CCCGGCGACC CGGGCAGCCC CTGGGCCATT GGCAGCGGAT CCGGTGGGCA TAAGGCCGTG
CATCCCGATC TCGGCACCCT TGAGGATTTT GAGGGCTTCG TGCGCGAGGC CGAGCGGCAA
GGACTGGAAG TCGCTCTTGA TCTGGCTTTT CAATGTTCCT ACGACCACCC CTATGTCCGG
GAACACCCGG AATGGTTTTC CTGGCTGCCG GACGGCAGTA TCCGCTACGC CGAGAATCCC
CCTAAAAAAT ACCAGGATGT GGTGCCGCTG AATTTCGACT GCGCGGATTG GGAGAACCTC
TGGGAGGAAC TCAAGTCCGT GGTCCTGTTC TGGTGTGAAC GCGGCGTCCG GATCTTTCGG
GTCGACAACC CGCATACCAA ACCGTTGCGG TTTTGGGACT GGTGCATCGC CGAGGTGAGA
AAAGTCTATC CCGACACCCT TTTTCTGGCC GAGGCCTTTA CTCGGCCCAA GGTCATGTAC
CGCCTGGCCA AGGGCGGCTT CAACCAATCC TACACCTATT TCACCTGGCG CAACAGCAAG
ACCGAGTTGC GGGACTACCT CGAGGACCTC GTCGAAGGGG CCCCGCGGGA TTTTTTCCGG
CCCAATTTCT GGCCCAACAC GCCGGATATC CTGCCGGAAT TTCTCCAGCA CGGCGGCAGA
CCAGCCTTTG TGCTGCGCCT GGTGCTCGCG GCGACTCTGT CCTCGAACTA CGGCATGTAC
GGTCCGGCCT TTGAATTGTG CGAGGCTGAG GCCGTGCCTG GTCGGGAAGA ATACGCCCAC
TCGGAAAAAT TCGAACTCAA GGCCTGGGAC TGGAACCGGC CGGGGCATTT GCGGGAAGTC
ATCACTGCGG TCAACCGGAT CCGGCGAGCC AACCCCGCTT TGCACTCGAC CTGGAATGTC
CGGTTCGTAG ATACGGACAG CGATCAGGTC CTGGCCTATG TCAAAACCGA TGCCGAGGCC
GAGAATATTA TCCTCGTCGT GGCCTCCCTG GATCCGTTTC AGCCCCAGAC CAGCACTGTC
TCCTTGCCGC TTGATGACCT CGGGGTCAGC CGGGATGCCC CGTATCTGGT CCACGACCTG
CTCGGCGAGG AGTATTTCTT CTGGCAGGGA GACCACTCGC GGCTGACCCT CTATCCCCAG
TCACAGCCGG CGAGGATCTT TCGGCTCCAC AAACGGATGC GCCGCGAACA GGATTTCGAC
TATTTCATGT AG
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| Protein sequence | MGKKTRQRVC IERVRPSVDG GRFPAKRVQG ETVTIQADIF TDGHDTLAAE VLLALPGERH
WQRHALQARP NDVYTTSIFL EHRGEYVFRI QAWRNVYQTW LSDVLKKYDA GQDVAVELQA
GGELVRAMSD RLNGADQAFA LEQAGVMERF ADSSPEDAFA AAQGDRLRRL LRYAGRSEEH
GGLSPRFVID VDRPRAGFSA WYEFFPRSFG EFPGAHGTLT DAAAMLPHIA HMGFDVVYLP
PVHPIGHTFR KGRNNAPEAE PGDPGSPWAI GSGSGGHKAV HPDLGTLEDF EGFVREAERQ
GLEVALDLAF QCSYDHPYVR EHPEWFSWLP DGSIRYAENP PKKYQDVVPL NFDCADWENL
WEELKSVVLF WCERGVRIFR VDNPHTKPLR FWDWCIAEVR KVYPDTLFLA EAFTRPKVMY
RLAKGGFNQS YTYFTWRNSK TELRDYLEDL VEGAPRDFFR PNFWPNTPDI LPEFLQHGGR
PAFVLRLVLA ATLSSNYGMY GPAFELCEAE AVPGREEYAH SEKFELKAWD WNRPGHLREV
ITAVNRIRRA NPALHSTWNV RFVDTDSDQV LAYVKTDAEA ENIILVVASL DPFQPQTSTV
SLPLDDLGVS RDAPYLVHDL LGEEYFFWQG DHSRLTLYPQ SQPARIFRLH KRMRREQDFD
YFM
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