| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0018 |
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| Symbol | |
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| ID | 8417820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 19568 |
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| End bp | 20857 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645036581 |
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| Product | NusB/RsmB/TIM44 |
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| Protein accession | YP_003196898 |
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| Protein GI | 258404156 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCCGAT CCCCAGCCCT CCCCCCTGCC CGGCAGGCCG CCCTGTCCTG TCTGGAAGGG
GTCCTTTTGC GTGACCAGGA ACTCCAGGCG AGTCTCGATG GGGTGTTGGA TTCCGCCTCG
CTCGAACCCC GAGACCGAGC CCTGGCCACT GAACTTGTCT ACGGCGTGTG CCGGCACAAG
ACCCACCTGG AAACGGCCAT CACCCGTTTT GTGCACCCGA AGACCCGACT CAAGCCCCGC
CTGCGCCTCA TTCTGTCCGT TGCCGCTTAC GAGATGCTCT ATTTGGACCG CATCCCTGCT
TATGCCAGCG TGGATTGGGC GGTGAACGCG GTCAAAAAAC GGGTCGCCGT GCAGCGCGCC
GGTGTGGCCA ACGCTGTTTT GCGCCGCCTG GCTGACGATC TGCACAACCG CGGCCGACCC
GCTGTTGTCC ATGAACTCCA AGCGGTGCGC GGCTCGAACG ATCAAGCCTG GGCAAAGGCC
TATTCCTGTC CAGAATGGAT TGTGCGCTTG TGGAGGCGGG CCTATGGCGA TCAGACGGCT
GCGTCACTCC TTCAGGCTTC GCTGCAGGTG CCTCCCGTTG GACTTCGCTT CGCCCCGGGC
CCGCAAGGGG ACCAGGCGTG GCAACGGTGG CGACACCGTC CGGAGTGTTT GCAAGCTGTG
GCACGCGGGG TAGCTGTGCA CAATGTGGAC GCGGCGGCGG TGGAGGAACT CGAAGCCCAG
GGGAGTGCCG CACGACAGAG TCTGGCCGCT CAGGAAGCCC TGTGGGCCTT GGAGCCGAGC
GCTTGGGAAG GGCCATTGTG GGACGGATGC TGCGGTCGTG GCGGCAAGAC CTTGTTTTGT
CGGGAACTGG GGTTCACAGT CTATAGTAGC GATCCCCATC GGCAGCGGGT GCAGTTGCTG
GCCCAGCAGT CCAGTCGGAT CTGTCTCGCT GACGCAGCGT ATCCGCCCTT TCGCTCCGGA
GAGCTGCGCA CGGTCCTGCT CGATGTGCCT TGTTCGGGGC TCGGCGTACT CAGTCGTCGA
CCGGACAGCA AATGGAAACG CGCCCCTGAA GATCTTCAGG GGTTGGTCCG TTTGCAGCGG
CGCATGCTTG AGGCCGCTTT CGCCCTGCTG CCGCCCGGAG GACGGCTGGT GTACATGACT
TGCACCTGTA ATCCTGAGGA AAATGAAGAC CAGATCCAAT GGTTGTGTCA CCGTGAGCCC
GGCGGAGTTC TGGAGCGACA GTGGCAGACA GCGTGGGATT CACGGCTTTT TGAGTTTTTC
TATGCCGCCT CGGTTGTCCG CGAATCGTGA
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| Protein sequence | MSRSPALPPA RQAALSCLEG VLLRDQELQA SLDGVLDSAS LEPRDRALAT ELVYGVCRHK
THLETAITRF VHPKTRLKPR LRLILSVAAY EMLYLDRIPA YASVDWAVNA VKKRVAVQRA
GVANAVLRRL ADDLHNRGRP AVVHELQAVR GSNDQAWAKA YSCPEWIVRL WRRAYGDQTA
ASLLQASLQV PPVGLRFAPG PQGDQAWQRW RHRPECLQAV ARGVAVHNVD AAAVEELEAQ
GSAARQSLAA QEALWALEPS AWEGPLWDGC CGRGGKTLFC RELGFTVYSS DPHRQRVQLL
AQQSSRICLA DAAYPPFRSG ELRTVLLDVP CSGLGVLSRR PDSKWKRAPE DLQGLVRLQR
RMLEAAFALL PPGGRLVYMT CTCNPEENED QIQWLCHREP GGVLERQWQT AWDSRLFEFF
YAASVVRES
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