Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0014 |
Symbol | aspS |
ID | 8417816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 15251 |
End bp | 17059 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645036577 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_003196894 |
Protein GI | 258404152 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAAGAGC GTAAAGGGAA AGATCTCCTG CAATCGGTCG GCGGATGGAA ACGGACACAC CATCTCGCCG CACTCACGAG CGAAAACCTG GGGCAGGAGG TCTGCCTCAT GGGCTGGGTC CAGTTTCGCC GGGACCACGG CGGGCTTATC TTCATCGATC TGCGGGACCG CCGGGGGCTG ACGCAGATCG TCTTCTCCCC GGAGATAAAC GAGCAAGCCC ATGCCGAGGC CCATGTGCTG CGTCCGGAAT ATGTCCTGGC TGTCAAAGGG ACGGTCCGTG AACGCCCTGA GGGGATGGTC AATCCTCGTC TGGCCACTGG CGAGATCGAA GTCGTGGTCA CTGAATGGAA GCTACTCAAT GTGGCGCAGA CCCCTCCCTT TGTCCTCGAA GAGCGGGCCG AGGTCTCAGA AAATGTCCGT TTGGCCCACC GCTATCTGGA TATGCGCCGC CCTGGCCTTG GCAGCAATCT GGTGGTGCGC CACAAGGCCA CGCAGGCGAT TCGCAATTAC CTTGACCAAT TGGATTTTCT TGAAATCGAA ACTCCGGTAT TGACCAAGTC GACCCCGGAA GGCGCCCGGG ATTTCCTGGT CCCCAGCCGG CTGAACCAAG GGGAATTCTA CGCCCTGCCC CAGAGCCCCC AATTGTTCAA ACAGTTGCTC ATGTACGGCG GCATGGATCG GTATTACCAG ATCGTGCGCT GTTTTCGTGA CGAGGACCTT CGAGCCGACC GGCAACCGGA ATTTACCCAG ATCGATATGG AGATGTCCTT CGCCGAAGAG GAGGATGTCA TGGGAGTGGC CGAAGGATTG GTGGCTGAGG TCTTTGCCAA GACATTGGGC GTGGACTTGC CGAACCCTGT GCCGCGAATG ACCTATGCTG AAGCGGTGGA CAAATACGGC CTGGACCGCC CTGACACCCG TTTCGAACTC TTGCTCGAGG AGGTCACCGA GCTGGTGCGC GGCTCGGAGT TCAAGCTCTT TGCCCAGGCG GAGATGGTCA AAGCCCTGCG CGTTCCCCAG GGCAGCGAGC TGACCCGCAA GGAAATCGAC GACCTGACCG AGTTTGTGAA AATTTACGGC GCCAAAGGTC TGGCCTGGAT CAAGATCAAG GATGACGGCT GGCAGTCGCC CATCGCCAAA TTCCTCAGCG ACGCGGAGTG CACGGCCTTG ACCGACCATC TTGGCCTGCA AAGCGGAGAT ATCGTCTTTT TCCAGGCTGG CGGGGCCGAT ATGGTCAATA CCGCTTTGGG GCAGCTGCGG TTGCGACTGG GAGAGCGTTT CGATCTCGTT CCCGCTGACC GTTTTGATCT GGTCTGGATC ACGGATTTTC CGCTCATGGA GTGGGATGAT GAGGCCCAGC GCTGGGTGGC CCGGCACCAC CCTTTCACCG CCACCCGCGA AGAGGATATC GCGGCCATGC TTGAGGACCC CGGGGCTGTG ATCGCCCGCT CTTACGATCT GGTCCTCAAC GGCAACGAGA TCGGTGGTGG CTCGGTGCGT ATCCATCGCA GCGAAGACCA GTGGCGGATG TTCGACGCCC TGGGCATTGA CCGGGCCGAG GCCGAGGAAA AATTCGGCTT TTTGCTCCGC GCCCTGGAAT ACGGTGCCCC TCCCCACGCG GGTATTGCCT TTGGACTTGA TCGTCTTATT ATGATTTTGT GCGGTGCCGA ATCGATCCGA GATGTCATCG CGTTTCCGAA AACCCAGAAG GCGACCTGTC TGTTGACCGA TGCTCCTTCC GCAGTGGCCA GCACGCAATT GCGTGAACTC GGCCTGCGGT TGCGGGAGAA AAAGAAATCA GAAGCGTAG
|
Protein sequence | MEERKGKDLL QSVGGWKRTH HLAALTSENL GQEVCLMGWV QFRRDHGGLI FIDLRDRRGL TQIVFSPEIN EQAHAEAHVL RPEYVLAVKG TVRERPEGMV NPRLATGEIE VVVTEWKLLN VAQTPPFVLE ERAEVSENVR LAHRYLDMRR PGLGSNLVVR HKATQAIRNY LDQLDFLEIE TPVLTKSTPE GARDFLVPSR LNQGEFYALP QSPQLFKQLL MYGGMDRYYQ IVRCFRDEDL RADRQPEFTQ IDMEMSFAEE EDVMGVAEGL VAEVFAKTLG VDLPNPVPRM TYAEAVDKYG LDRPDTRFEL LLEEVTELVR GSEFKLFAQA EMVKALRVPQ GSELTRKEID DLTEFVKIYG AKGLAWIKIK DDGWQSPIAK FLSDAECTAL TDHLGLQSGD IVFFQAGGAD MVNTALGQLR LRLGERFDLV PADRFDLVWI TDFPLMEWDD EAQRWVARHH PFTATREEDI AAMLEDPGAV IARSYDLVLN GNEIGGGSVR IHRSEDQWRM FDALGIDRAE AEEKFGFLLR ALEYGAPPHA GIAFGLDRLI MILCGAESIR DVIAFPKTQK ATCLLTDAPS AVASTQLREL GLRLREKKKS EA
|
| |