| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_1540 |
|---|
| Symbol | |
|---|
| ID | 8428501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum acetoxidans DSM 771 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013216 |
|---|
| Strand | + |
|---|
| Start bp | 1603967 |
|---|
| End bp | 1607530 |
|---|
| Gene Length | 3564 bp |
|---|
| Protein Length | 1187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 645033874 |
|---|
| Product | helicase domain protein |
|---|
| Protein accession | YP_003191026 |
|---|
| Protein GI | 258514804 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1111] ERCC4-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0100683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000869975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | GTGAATGATG CTCTAGATAT CAATTCAAAT AGTGTTGTAT ATGCAGAGCA GATTTATAAA
AAGTGTAATA CCATACGAAG TCGTGTTGGA ATTCCTAAAG GTGTAATAGT TGATTTCTAT
TGTCCTGAAT GTCGTTCTCC AGTTTTTTTA AAGACAAGGG CTGGAGCTTC ACCATGGTTT
GAACATGAGC ATTTAGATAA GGAAAATAGA ACGGCTATAC ATCTTGCTTG TTCAAGATAT
ACAAATGCGG ACAAAAGGGA ATATAAACCT GTAGATACAT ATAGAATCTC AGGTGCTATT
CCAATATATC TGTTAGGGAA AAGTGATCTT TTTAAATTAA GAGTCTACTT TCCACAATTA
TCTGATCAAT CCATGAAAAT GTTAGTAGAA TCAAATGCAA AAGTATGTCT TTTTCAAAAT
AATTCTTTGC ATTATGTGTT TAGCTCTCAA AATGTAAATT ACATTGATAT TGCAACTTAT
ACAAAACATG GCTTTGAAGT TCAAATAAAA GATTCCAATG GGGATGTATT AAGAGATGTG
CCGGAAGAAG TAAAAAGAAA ATGGGTTTGT GGTATATCTG CTATAGATGT GAGTCGGGAT
ATTTTTCATT TTTGGAATGA TGGTGGTATG AGAGTATCAA CTGGTGGATT TATTTATGTT
GGTACATCAT ACAGAATATT AAAAAGCAGA ACAGATTGGA ATTATGACAA GGAAAATAAT
GCTATAGAAA TTAAAAAGGT TGGCGAAGTT AATTTTAAAA ATCTTGCCTC AATAGATGTT
TATGAATTAA CACCCATAGA GGTAACAACT GAATCATTGC AATATTTTGC AAAACGAGGA
TATCTTTTAA AACATAGAAA TGATGAAATA ATTCCACTTT GGCCGCCAGC AGTTTCTAAA
GGTAGAGACT TGATTTATAA AGACAAAACA TCTTTGTTTT TGCACAAAAC TAGCAGAGGT
AATATAAAGG ATCAAAAGCT TTTTACGTTG GAGGGAAACA AAATCATTCA GATTCAATCA
CGTATATTGA AAATAAATGA TGTCTCCGAG ATAGTTCAAA TTAATGTTGG TTTCTCAAAG
CCGATAATGC TTGGCGGAGA ACTGACACCT ATGTTATACG ATATACATCA AGATGAAAAT
GCAATGTGTT GCGAGGCAAG GGGCTTAGAG TTAAAAGTTG AAGATAAAAA TGCATGTGCA
GTAGCTACAT CATATAAAGA ATTGCCCATA GAGGGTAAGT TCTATATAAA ATCAAATTTA
CCTTTTGTGA CCTATTTTAA GAGGGGTAAC TTTGTAATTT ATTCAAGCTT TAATTCTGGT
TATATTGAAG GAGTAAAATT TGATGTAGAG GTATTTGTTG ATTGTGGTTC TTGGGGCAAA
TATTGTTATT CCATGCAAAA GAAAAATTAT AAGCAGGGTA CTATTAACTG GGATTCTGTG
TATAGGCGGT TGTTACTTTG TCATGGTCAA ACAATAATGG CTAATAAGCA ATTACAGCAA
AATCTTGCCC GGCGCCATAT CCTGCCGATA GATGGCATTC GATTTAACCC CCTGGAACGT
CGTGTCTATG ACCAACTTGA GGATTACTGT AAGGGTTTGG CCATGCAAAT CCGTAAACAT
GGAGACAGGC AATCACAACA GATGATGAGC TTTTTACTTA GCTTTCTGCG GTTACGATTC
GCTTCCAGTC TTTATGCATT CCATAAGACA TTAGAACGCC GTCTGCATAA AGTGGAAGCA
ACGTTGCGGC AGCAACTTGT AATGGAGGCA GAAGATTCTG GGTCCAATTC TTCGCTACAG
GATGTTATTT TTGAGGGGGA AGATGAAGAC GACTTGGTGG TTGTGGAATC ATTGCTCCAA
AACCGGACAC AGGATGATTT GGAATGGGAA CGCGAATGTC TCAAGAGCAT GCTTAAAGAC
ATGGCAGACC TCACCGGCGA CTCATCTAAA ATGAAGCTGC TTTTACAAAC GCTGGATCAA
CGTAAAGACC GGCAAACCGG GCGTATCCAG CAAACGGTTA TCTTTACCCG TTTTTACGAT
ACGCTCACTG ATATCGTGAA GCGACTCTGC CAGGCAGACC CGCAGATGCT AGTAGGCACC
TATTCGGGGC AGGGAGCACA GTGTTTTAAT TCGGTTACAG GCCGTATGGT TAACCTAGAT
CGTGAAGAGG TAAAAGAAAG ATTCTTGCGC AGCGAGGTTG ACATCTTAGT GTGTACTGAC
GCAGCAGCGG AGGGTTTAAA CCTGCAGACT GCTGATCTTT TGGTTAATTT CGATCTGGGT
TGGAACCCAA TGAAAGTTGA GCAGCGAATA GGGCGTATTG ACCGTATTGG ACAAAAACAT
GAGGATATTT ACGTCCTCAA CCTATGCTAT GCCGGAAGTG CAGAAGAAGT GGTGTATGGC
CGTTTACTAA ACCGCTTAGC TAATGCCAAT ATGATTGTTG GCACGCAGCA GGTATCGCTT
CTGCCGGTGG AACAAGAAGA GTTCAGCCAG TTGGCTGAAG GAACACTGAC ACCCGAAGAA
TTGATGGCCC GTGCCCAAGA ACGACTCGTG TTGCAACGCC AACATACAGA GAGTATGGAA
ATTAGCCCTA AAGAACTTTA TGAAATTTAC AAGCGTATGG CCCAGATTGA TGATCAGAGA
ACTACTCCGG TAAATCTGGA GGCAATATGG GAAACACTGA GCCAATCGCA GTACCTGCGC
CATTTGGGTT GCACCGTTTC GGATGAACCA GCGAAGCCAG CGTTGACATT GTTCGGAATT
GATGGCATAC CCAGTGGAAC AGTCCTTACT ACTTCCCGCG CGCTTTACGA GGAAGGTTTG
GCTGATGGCG GCGCACGCGT GCATTTCGCC TCTTACGGTG ATCCGTTCTT TGATGCTATT
TTGGAGCACC TGAGCAGTTT CGAACTTCCT TCCTGTGTTC GGCGAATCGC CGTCCCTGTT
CCCGGTTTGG AGGATGTTGA AGTGGTTATT TATGTAGCAA TCTGCCGTGG CGACGGTGGT
GTTTGCCAAA TGCGGCTTAT CCGAGCGTGG AGTGACCTCA AGGATTTGGC TTTAGCAGAG
GATGAGACCA TAAATGACGA GGAAATAATG TCGCAACGAG AACAACTTTA CCAGCTGGTT
TTGAAAGAGT TTGAGCCCTA CCTGGTAGCA GACCGCATTG AACGAGAAAA CATACGGGCT
GCTCTGGTGC ATGAAATGCT CAATTTCCTG GTAATTCAAG ATTTTCTTAA AGTCAGGGCA
AGTTTTGCCG GAGAAAATGC ACTCTTTTGG CCGGTTTTAA AGGAAGTTGC CTCTCTAATT
GAGGAGCGCG AGCCCCTTCA GGCAACCGGT TTACCGGCGG ACATCCTGAG GAGATTCACC
GGCGAATTAC TTTTTGCTTG CCAGGTTCCT ACTATTGGTG ATAAAACCAT CCTGCCGGTA
CCGCGCATAA TGGGCCGGGC GGCAGTTGAA GCCGCAAGTC GTCTGGCGGA CAGTATGAAG
AAGAAAAGGG GTAGGCTCCT TGTTGATACA GTTTTGGCCC GACTGCAGCG TGAAGTAGAG
GTAAGAAAAA GATTGATTAA TTAG
|
|---|
| Protein sequence | MNDALDINSN SVVYAEQIYK KCNTIRSRVG IPKGVIVDFY CPECRSPVFL KTRAGASPWF
EHEHLDKENR TAIHLACSRY TNADKREYKP VDTYRISGAI PIYLLGKSDL FKLRVYFPQL
SDQSMKMLVE SNAKVCLFQN NSLHYVFSSQ NVNYIDIATY TKHGFEVQIK DSNGDVLRDV
PEEVKRKWVC GISAIDVSRD IFHFWNDGGM RVSTGGFIYV GTSYRILKSR TDWNYDKENN
AIEIKKVGEV NFKNLASIDV YELTPIEVTT ESLQYFAKRG YLLKHRNDEI IPLWPPAVSK
GRDLIYKDKT SLFLHKTSRG NIKDQKLFTL EGNKIIQIQS RILKINDVSE IVQINVGFSK
PIMLGGELTP MLYDIHQDEN AMCCEARGLE LKVEDKNACA VATSYKELPI EGKFYIKSNL
PFVTYFKRGN FVIYSSFNSG YIEGVKFDVE VFVDCGSWGK YCYSMQKKNY KQGTINWDSV
YRRLLLCHGQ TIMANKQLQQ NLARRHILPI DGIRFNPLER RVYDQLEDYC KGLAMQIRKH
GDRQSQQMMS FLLSFLRLRF ASSLYAFHKT LERRLHKVEA TLRQQLVMEA EDSGSNSSLQ
DVIFEGEDED DLVVVESLLQ NRTQDDLEWE RECLKSMLKD MADLTGDSSK MKLLLQTLDQ
RKDRQTGRIQ QTVIFTRFYD TLTDIVKRLC QADPQMLVGT YSGQGAQCFN SVTGRMVNLD
REEVKERFLR SEVDILVCTD AAAEGLNLQT ADLLVNFDLG WNPMKVEQRI GRIDRIGQKH
EDIYVLNLCY AGSAEEVVYG RLLNRLANAN MIVGTQQVSL LPVEQEEFSQ LAEGTLTPEE
LMARAQERLV LQRQHTESME ISPKELYEIY KRMAQIDDQR TTPVNLEAIW ETLSQSQYLR
HLGCTVSDEP AKPALTLFGI DGIPSGTVLT TSRALYEEGL ADGGARVHFA SYGDPFFDAI
LEHLSSFELP SCVRRIAVPV PGLEDVEVVI YVAICRGDGG VCQMRLIRAW SDLKDLALAE
DETINDEEIM SQREQLYQLV LKEFEPYLVA DRIERENIRA ALVHEMLNFL VIQDFLKVRA
SFAGENALFW PVLKEVASLI EEREPLQATG LPADILRRFT GELLFACQVP TIGDKTILPV
PRIMGRAAVE AASRLADSMK KKRGRLLVDT VLARLQREVE VRKRLIN
|
|---|
| |