Gene Dtox_1300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_1300 
Symbol 
ID8428248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp1319194 
End bp1321140 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content44% 
IMG OID645033640 
Productpenicillin-binding protein, 1A family 
Protein accessionYP_003190805 
Protein GI258514583 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.396458 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0031785 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGAAAA AGATCTCCGC AATCTTGATT ATTTTATCAC TTGTTTTTAT GTCAGGCTGT 
AGTGTTTTAA AGTCTTTGCC GGAACCTGAA ATTCCGGTTG CCTCAAAAAT ATATGATGTA
AACGGCCAAC TGATCACAAC TGTTTACAGG CAAAACAGAA ATCCTGTGAC TATGAATGAA
ATATCCCCGC ACGTGCAGGA CGCAATAGTT GCTGTTGAGG ACAGCAGATT TTATAGACAT
CATGGACTGG ATTTTCTGGG TATGTTAAGA GCTTTGTATA GAAATCTCTT AGCAGGCGGT
GTAGTGGAAG GCGGCAGTAC CATTACACAA CAGCTGGCTA AAAATTTGTA TCTGGGTAAT
GAACGCACTT TTTCCCGAAA ATTAAAAGAG ATGGTCTATG CTGTTCAATT AGAGAGAAGC
TTCAGTAAAA AAGAAATATT GCAGATGTAT TTGAATACGA TATATTTTGG CCAGGGTGCC
TATGGGATAG AGGCAGCATC CAGGTACTAC TTTGATACAC CGGCCAAGGA TTTAGATTTA
GCGGAGGGCG CTATGCTGGC TGGTATACCT CGTTCACCTG AAAATTATTC ACCTGCTAAT
GACTGGGATG CTGCTAAAAA AAGACAGACT GTTGTTCTGG ATCGCATGGC GGAGTTAAAT
TATATCAGTA CTGAGCAGGC TGCGGCAGCT AAGAATGAAC CTTTGATACC TGTAAAAGAA
AAAAAATGGA ATCAAAAGGC TCCCTATTTT ATTGCTGAGG TTGTTAATTA TTTTAAAGAG
CATTACCCGC AAAACTGGGA AATGATTTTT ACCCAGGGCT TATCAATTTA CACCACTCTG
GATGTGAAAC TGCAGGATTC AGCGGAAAAA GCTGTACAGT CTAATTTAGC TAAGTCGCCG
CCGGATTTGG AATGCGCGCT GGTAGCACTC GACCCGCATA ACGGTTATAT CAAGGCTATG
GTAGGGGGGC GCGATTTTAA CCGTTCTCAG TACAACAGAG TTTATGCCCG CAGCCAGCCT
GGCTCAGCCT TCAAGCCTTT TCTTTACGCA GCGGCTATTG ATGCCGGCTA TACGGCTGCG
ACAACCATTA AATGTGAACC TACGGTTTAC AGGTTAGATA CAGGCGAGAA TTATATACCG
AAAGATTATC ACGGCAATTA TCATTATCGT CCGATGACTC TCAAAGAAGC CCTTTATATT
TCTGACAATG TGGTATCTGT AAATCTCAAC AATCAGATTG GTCCGGCCGT TTTAGCCTCT
TATGCCGCTA AAATGGGTAT AGATAGTCCC TTGCGTTCAT ATCTATCTTT AGTGCTCGGC
ACTTCGGAGG TGACGCCTAT AGAAATGGCC CGGGCCTATG GGCCGTTGGC CAACAACGGG
ATAAAAACCA AGCCGTTTTT TATCTTAAGA GTAACGGACA GGTATGGGCG GGTATTAGAA
AACAATAGGC CTTTTCAGGA GCAGGCCATA GATCCGAAGA GCGCCTATAT AGTTACCGAT
ATGTTGAAAT CAGTGCTTTA TCCCGGTGGC ACGGCCCCAC AGGTGGCAGG TATAATTAAC
CGCCCGGCAG CCGGAAAAAC GGGCACCACC GAAGATCTTA AGGATGCTTG GTTTGTTGGC
TATACTCCTG ACATAGTGGC AGCTGTTTAT ACCGGCTATG ATGATAAAAA TAAAAAAGCA
GGCAATACAG GTGGAGTAAT AGCAGCGCCT ATATGGGCGG ATTTTATCCG GGAAGGCCTG
AAAGGCCAGG AAACCAATGA ATTTACAGTC CCTGATGGAA TAGTTTTTAC GGATATTTGC
CCGGAAGACG GTCTTTTAGC CGCACCCGGT GATCCGAGAG CTATTCACGC AGCTTTTATC
AAGGGAACTG AACCGAAAAC ACCCTGCTAT TCTTTATTGC AGGATAATTT AATACAATTA
CCTGATAATC CGGAGATCAG GCCGTAA
 
Protein sequence
MLKKISAILI ILSLVFMSGC SVLKSLPEPE IPVASKIYDV NGQLITTVYR QNRNPVTMNE 
ISPHVQDAIV AVEDSRFYRH HGLDFLGMLR ALYRNLLAGG VVEGGSTITQ QLAKNLYLGN
ERTFSRKLKE MVYAVQLERS FSKKEILQMY LNTIYFGQGA YGIEAASRYY FDTPAKDLDL
AEGAMLAGIP RSPENYSPAN DWDAAKKRQT VVLDRMAELN YISTEQAAAA KNEPLIPVKE
KKWNQKAPYF IAEVVNYFKE HYPQNWEMIF TQGLSIYTTL DVKLQDSAEK AVQSNLAKSP
PDLECALVAL DPHNGYIKAM VGGRDFNRSQ YNRVYARSQP GSAFKPFLYA AAIDAGYTAA
TTIKCEPTVY RLDTGENYIP KDYHGNYHYR PMTLKEALYI SDNVVSVNLN NQIGPAVLAS
YAAKMGIDSP LRSYLSLVLG TSEVTPIEMA RAYGPLANNG IKTKPFFILR VTDRYGRVLE
NNRPFQEQAI DPKSAYIVTD MLKSVLYPGG TAPQVAGIIN RPAAGKTGTT EDLKDAWFVG
YTPDIVAAVY TGYDDKNKKA GNTGGVIAAP IWADFIREGL KGQETNEFTV PDGIVFTDIC
PEDGLLAAPG DPRAIHAAFI KGTEPKTPCY SLLQDNLIQL PDNPEIRP