| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_1225 |
|---|
| Symbol | |
|---|
| ID | 8428164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum acetoxidans DSM 771 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013216 |
|---|
| Strand | + |
|---|
| Start bp | 1244119 |
|---|
| End bp | 1245024 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 645033558 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003190732 |
|---|
| Protein GI | 258514510 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.103765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGCT TATTAGATAA TTTTATCATA TATCTGCAGT TGCAGAAAAA TGCTTCCCCG
AAAACAGTAG AAAGTTATCA GAAGGACTTA TTTGACGGGA TAGATTTTTT TAGTGCCGCT
TTAAATAAGA AAGACAATGA ATTGCTGCCA ATGGATGTTA GCCACAACCT GATGCGAAGA
TATCTGGCCC AAATGCAGCA AAAGGGTTTG GCCCGCAGCA CTGTGGCCCG CAGGTTAGCC
TCCTGGCGTT CCTTTTATAA ATATTTATGC AGAGAAGACT ATCTTCAGCA AAACCATCTG
GCCGGCGTAG CAACTCCGAA AGGAAACGGT AAATTGCCGC TTTTTCTGGA AACAGAACAG
CTCAAACTTC TTTTGGAGGC GCCGGACAGT ACAACTTCGC TGGGTCAGCG TGATGCGGCA
CTTTTGGAAA TTCTTTATGC CGCCGGCCTC AGGGTATCGG AAGCAGTGAA TCTGGATTTA
AGTGCTTTAG ACTTTGACAG CCGTATGCTC AAGGCTTACG GCAAGGGTTC TAAGGAACGC
ATGATACCCT TTGGGACTTA TGCCGCGGCA GCTTTAAAGT TATATATCAA AGACGGCAGG
CATAAGTTGT CGAAAATTTC TCAATCTGAA CAGGCAGTGT TTCTCAATAA TTCAGGAACT
CGTTTATCTG ACCGGGGCAT ACGCAAAATT ATAGATAAAT ATATTGAAAA GACGGGTTTG
AAATCAGCTA TCAGTCCCCA CACCTTAAGG CATACTTTTG CTACACATCT CCTGGACAAC
GGGGCTGATT TGCGCTCGGT ACAGGAGCTT TTGGGCCATG TTCGTCTTTC CACTACACAG
ATTTATACTC ATGTATCAGT GGAAAAGCTT AAAGGTGTTC ACAAAAAATA TCATCCAAGA
TCATAA
|
|---|
| Protein sequence | MYSLLDNFII YLQLQKNASP KTVESYQKDL FDGIDFFSAA LNKKDNELLP MDVSHNLMRR
YLAQMQQKGL ARSTVARRLA SWRSFYKYLC REDYLQQNHL AGVATPKGNG KLPLFLETEQ
LKLLLEAPDS TTSLGQRDAA LLEILYAAGL RVSEAVNLDL SALDFDSRML KAYGKGSKER
MIPFGTYAAA ALKLYIKDGR HKLSKISQSE QAVFLNNSGT RLSDRGIRKI IDKYIEKTGL
KSAISPHTLR HTFATHLLDN GADLRSVQEL LGHVRLSTTQ IYTHVSVEKL KGVHKKYHPR
S
|
|---|
| |