Gene Dtox_1053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_1053 
SymbolmurD 
ID8427992 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp1078283 
End bp1079632 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content45% 
IMG OID645033388 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_003190562 
Protein GI258514340 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.625327 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTGG AAAACAAAAA GGTACTGGTT GTGGGAGCCG GAAAAAGCGG TCTGGCCGTT 
GCCCGTTTTT TAAAGACGAA AAATGCTGAG ATTGTGATAA CTGATCAGAA TTACTCTGTT
GAGTTGCAAA AGCAAATTGA GCAAATTGGT GTGGTGCCTG TTCTGGGGCG ATATCCGGAG
TTTTCTGATA ATGATTATGA CTTAGTTGTG GTTAGTCCCG GTGTTCCGCT CAGTGTTCAC
CCGGTTGTTA AGGCTCATAG CTTGGGTATT GAGGTTATAG GTGAATTGGA ATTAGCCGCT
CGTTTTATTA AAGCTCCTGT TGTGGCTATC ACCGGTACGA ATGGAAAAAC CACAACTACT
TCCCTGATCG GTGAAATATT TAGAAATAAT GGTATAAAAA CATTGGTAGC CGGTAATATC
GGCTTGCCTT TGGTTACTGA GGTAGAAAAA TATGGTCCTG GTGACATTAT TGTGGCTGAA
GTATCCAGCT TTCAATTAGA GACTACCGTG CATTTCCGTC CTAATGTTGC TGTAATCCTC
AACATTACGC CTGATCACCT TGACCGGCAT GCTACCATGC AAAACTATGC GCAGGCCAAA
GCAAATATTT ATAAGCAGCA GCTGTCCTCT GATTACACTG TTCTAAATTA TGATGATTCT
TTGACAGCTT CACTGGCAGT TAAAGTGCCG GGCAGGGTCA TATTTTTTAG CCGCAAACAT
ATTTTAGATA GAGGGGTTTT CGTTCGTAAC GAGGAGATAA TAGCAGCGTT AGATGGCGAT
GAAACAGCTA TCTGCCGGGT CGATGAAGTT AAGATACCGG GGGCTCATAA CCTGGAAAAC
GCTTTGGCAT CTGTAGCTGC CGGATTTGTT TTGGGAGTTG GTCGGCAAGT ACTGGCTAAT
ACTTTGAAAA CTTTTCCCGG TGTGGAACAC CGGCTGGAAT TTGTGGCGGA GATTAACGGT
GTTCGCTATA TCAATGATTC CAAGGGAACC AACCCAGATG CCGCTGTCAA GGGATTGCAG
GCCTATAGTC AGCCTATTGT TTTAATTGCC GGGGGCAGGA ATAAAGGCAG TGATTTTAAA
GAATTTATGC AGGCAGCCAA GGAGAAGGTA AGAACAATGG TGGTGTTGGG CGAGTGTGCT
CAGGAACTGC TGGAAGCGGC GCAAGCTGTT GGTTTCGGCA ATGTTATTCA GGCGACTGAT
TTTATAAGTG CGGTAAAGCT GGCTGCGCAA ACTGCCCGCA GCGGTGATGT AGTGCTGCTG
TCTCCTGCGT GCGCCAGTTG GGATATGTTC AAGAATTATG AGGAGAGAGG CAGGCTTTTT
AAGGAGATTG TTAAGGATTT GAGGTGTTAA
 
Protein sequence
MELENKKVLV VGAGKSGLAV ARFLKTKNAE IVITDQNYSV ELQKQIEQIG VVPVLGRYPE 
FSDNDYDLVV VSPGVPLSVH PVVKAHSLGI EVIGELELAA RFIKAPVVAI TGTNGKTTTT
SLIGEIFRNN GIKTLVAGNI GLPLVTEVEK YGPGDIIVAE VSSFQLETTV HFRPNVAVIL
NITPDHLDRH ATMQNYAQAK ANIYKQQLSS DYTVLNYDDS LTASLAVKVP GRVIFFSRKH
ILDRGVFVRN EEIIAALDGD ETAICRVDEV KIPGAHNLEN ALASVAAGFV LGVGRQVLAN
TLKTFPGVEH RLEFVAEING VRYINDSKGT NPDAAVKGLQ AYSQPIVLIA GGRNKGSDFK
EFMQAAKEKV RTMVVLGECA QELLEAAQAV GFGNVIQATD FISAVKLAAQ TARSGDVVLL
SPACASWDMF KNYEERGRLF KEIVKDLRC