| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_0808 |
|---|
| Symbol | |
|---|
| ID | 8427746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum acetoxidans DSM 771 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013216 |
|---|
| Strand | + |
|---|
| Start bp | 821091 |
|---|
| End bp | 822866 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645033164 |
|---|
| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003190339 |
|---|
| Protein GI | 258514117 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000794554 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCAG GGAAAGCAGC CGCAATTGCA AAGGGATCTT CCAGGGAAGC CGTACAGGCA
CATGATTTTC ATGCGCACGA ACTGATAGTA AAAGAAGTGC CGGTTCTCAA TGCCATTTAC
AATGTTGTAA TTGCTGTTGA TTATTCCGGC AAAATTATTG TTTATAACCA CGGTTGTGAA
CGGCTGTTTA AGGTTCCGGC GGAAAAAGCG ATGGGACGCT TTGTATCGGA GGTAGTCCCC
ATGACCGGTT TGTTAAAGGT TTTAAAAACC GGTAATTCGC ATATAGGTCG TAAATTTGTA
CAGGGAAATT CTCTTTATAT TGTTAACAGG ACTCCGATTT TACATGACAA CAAGGTTGTC
GGAGCAGTAG GTGTGGCACA GGACATTACG GAATTGCAGC AGATAGCCAA CGAGCTGAAT
TCTGTCAATG AGATGAAATC AACTTTAGAA ACCATAATAG ATACAGGACA TGACGGTTAC
CTGGTAGTCA ATAAGGAAGG GTATGTCATA ACGCTGAACA AAGCATATGC TGAGTTGATC
GATATTAACC CTGAAGATGC TATCGGAAGG CATATAAAAG AAGTAATTCC TGAGACAGAA
TTGCATCTTG TATCTCAAAC AGGTAAAACG CAAATCGGCG AGGTTTTGAG AGTTAAAGGA
CGGGAAGCAG TGGTTATGCG CTACCCGATA AATAAAGACG GGCGGATTAT CGGTGCCGTC
AGCAAGGTAA TGTTCAGGGA TGTCAATCAG TTCATTACCT CGGCTAAAAC AGTCTATTCT
TCACAAAGGC GTATTAAAGG TGAGCCTGAA CAGTGGGCCA GTGCCCGCTA TACAGTTGAC
AATCTAATAG GTAAAAGTCA TCCCATGCTG CGGCTGAAAG AAACAGTCAG GCGGGTGGCT
TTAGGTCCCT CCACTGTATT GATTCGCGGT GAGAGCGGTA CAGGTAAAGA GCTTTTGGCT
CATTCCCTGC ATGTTGGATC TAATCGCTGC CTGGGCCCGT TTGTTAAGGT TAATTGCGCC
GCTGTACCGG AAAACCTGTT GGAGTCGGAA TTATTCGGCT ATGTGGAAGG GGCTTTCACC
GGAGCTAAAA AAGGCGGGCA AATAGGCAAA TTTGAGCAGG CTAACGGGGG CACTATTTTC
CTTGATGAGA TAGGGGATAT GCCGCTTTTA ATGCAGGCCA AGCTATTAAG AGTGCTTCAG
GAGAAGGAAA TAGAGAGATT GGGCGATAAC CGTGCCCGTC ATGTTGAGGT ACGGGTTGTT
GCCGCTACCA ACCGGCCGTT GGAGCAAATG ATTGCAGACA ATACTTTCCG GGAAGATTTG
TATTATCGCC TTAATGTAGT CACACTGCAA ATACCCTCCT TGCGTGAAAG GATAGATGAT
TTAAAAGACT TGGTTGAATA TTTTCTGGCT AAATATAATC ATGCCTTTGG TCTCAATATA
ACAGGTCTTT CCGCTGATGC CCTTGAGCTT TTTGAAAATT ACAATTGGCC GGGCAATGTG
CGGGAGTTGG AAAATGTGGT GGAAAGAGCT TTTAATCTGG TTGACGGGCA TATCATTGAT
GTGATGCACC TGCCGCCTTA TTTGCAAAAA TTCGGTAAGA GCAAACGGCA CTCAATTAAT
AAGTCGCTTC CCTCGCTGCT CGAACAGGTG GAGAAAGAAG CCATTGCCGA CGCCCTTTCA
GTCACTAACG GCAATAAGAT GCAGGCTGCT AAGATTCTGG GCATATCGCG GGCCTGGTTG
TACAAGAAAA TTGCCCAGTA CGGAATAAAA GCATAA
|
|---|
| Protein sequence | MTAGKAAAIA KGSSREAVQA HDFHAHELIV KEVPVLNAIY NVVIAVDYSG KIIVYNHGCE
RLFKVPAEKA MGRFVSEVVP MTGLLKVLKT GNSHIGRKFV QGNSLYIVNR TPILHDNKVV
GAVGVAQDIT ELQQIANELN SVNEMKSTLE TIIDTGHDGY LVVNKEGYVI TLNKAYAELI
DINPEDAIGR HIKEVIPETE LHLVSQTGKT QIGEVLRVKG REAVVMRYPI NKDGRIIGAV
SKVMFRDVNQ FITSAKTVYS SQRRIKGEPE QWASARYTVD NLIGKSHPML RLKETVRRVA
LGPSTVLIRG ESGTGKELLA HSLHVGSNRC LGPFVKVNCA AVPENLLESE LFGYVEGAFT
GAKKGGQIGK FEQANGGTIF LDEIGDMPLL MQAKLLRVLQ EKEIERLGDN RARHVEVRVV
AATNRPLEQM IADNTFREDL YYRLNVVTLQ IPSLRERIDD LKDLVEYFLA KYNHAFGLNI
TGLSADALEL FENYNWPGNV RELENVVERA FNLVDGHIID VMHLPPYLQK FGKSKRHSIN
KSLPSLLEQV EKEAIADALS VTNGNKMQAA KILGISRAWL YKKIAQYGIK A
|
|---|
| |