| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_0279 |
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| Symbol | |
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| ID | 8427214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum acetoxidans DSM 771 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013216 |
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| Strand | + |
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| Start bp | 304234 |
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| End bp | 307761 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645032677 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003189855 |
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| Protein GI | 258513633 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000274196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000517957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGCTGGATC TTAATAATTT TGATCGTATT CGGATTGGAT TGGCATCCCC TGAACAGATT
CGCGAGTGGT CAAGCGGTGA GGTTAAGAAA CCTGAGACTA TCAATTACCG GACATTAAAA
CCGGAAAGAG ATGGCTTGTT TTGTGAACGT ATTTTTGGAC CCACCAGGGA TTGGGAATGT
CATTGCGGCA AGTACAAAAG GGTTCGTTAT AAAGGAGTGG TTTGTGATCG TTGCGGTGTG
GAAGTGACTC GTTCCAAGGT GCGTAGAGAA AGATTGGGAC ATATTGAACT GGCTGCGCCG
GTATCGCATA TTTGGTACTT TAAAGGTATA CCCAGTCGAA TGGGTTTACT GTTGGATATG
TCTCCTCGCG CTCTGGAAAA AGTATTGTAC TTTGTCTCCT ATATCGTAAC TGATCAGGGT
AATACTACTC TTATTAAAAA GCAGCTGTTA ACTGAAACGG AATATCGTGA TAATAAGGAA
AAGTTCGGCA ACGAGTTTCA TGCCGGCATG GGTGCCGAAG CGATTAAGAT TCTTTTGGAA
GAAATAAATT TGAATGAGAT GAGCAGGGAG CTCCGTGCTG AACTAAAGGA AGTTACAGGG
CAGCGAAAGA TAAGAGCAAT TCGTCGGCTG GAAGTTGTCG AAGCTTTTAA GAAATCCGGC
AATCGGCCGG AATGGATGAT TATGGATGTG GTTCCTGTTA TTCCGCCTGA ACTAAGGCCA
ATGGTGCAAT TAGACGGGGG GAGGTTTGCC ACCTCGGATT TAAATGATTT GTACCGTCGT
GTGATTAACC GGAACAACCG TTTAAAGAGA CTGCTGGATT TGGGTGCACC GGATATCATA
GTTCGTAATG AAAAGAGAAT GCTCCAGGAA GCAGTGGATG CTTTAATTGA TAATGGCCGG
CGAGGCCGGC CGGTAACAGG TCCGGGCAAC CGTCCTTTGA AATCCTTAAG CGACATGCTG
AAAGGCAAGC AGGGCAGGTT CAGACAGAAC CTGCTGGGTA AGAGGGTAGA CTATTCGGGT
CGCTCGGTTA TTGTAGTTGG TCCCCGCCTG CAGTTGCACC AGTGTGGTTT GCCCAAAGAG
ATGGCGCTGG AATTATTTAA ACCTTTTGTA ATGAAAAGAT TGGTGAACGA GGGTTGCGCG
CATAATATAA AAAGCGCCAA GCGTATGGTT GAGCGGGTTC GTTCAGAAGT TTGGGACGTT
CTGGAAGATG TTATTAAGGA GCACCCGGTC CTGTTAAACC GTGCCCCGAC TTTGCACCGT
TTAGGAATTC AGGCTTTCGA ACCGATTTTA GTAGAGGGTA AAGCTATTCA GATTCACCCG
ATGGTGTGTA CTGCCTATAA TGCTGATTTT GACGGCGACC AGATGGCTGT GCACGTGCCT
CTTTCCGCGG AAGCCCAGGC TGAGGCGAGA TTGTTAATGC TTTCTGCCAA TAATATTTTA
AATCCTAAGG ATGGAAAACC GGTTGCAATC CCAACGCAGG ACATGGTGCT CGGTTGTTAC
TATCTCACGG TAGAGAAAAA AGGTGATTTT GGGGAAGGTA AAGCCTTTAA GGATGAAGAT
GAAGCTATTA TGGCTTATTA CAATAAGGCC TGCAGCCTAC ACGCCAGAAT CAGAGTGAGG
CGTTCCGACG GCAAGCTTCT TTCCACAACT ATTGGCAGGC TAATTTTTAA TGCGGTTATT
CCAGAAGAAT TGGGCTATAT TAATAAAGTA GTTGACAAAA AGGTCTCCAG CAAAATAGTA
GATGATTGTT ACCGCAAGCT GGGCTACGCT GCTACTGCTA ATCTACTGGA CGGCATCAAG
ACACTTGGGT ATGAGTTTGC TACCAGGGCC GGTGTGACAG TTGGTGTGGC TGACGTAACT
ATACCTGAGG CCAAGAAAGA AATATTGCTC GAATCCGAAC AGAAGGTTCG CGATATTGAG
AGGCAGTACA GGCGTGGTTT GATTACTGAG GATGAGAGAT ACCGGCAAGT GATCAATATT
TGGAACAGCG CCACTGACCG GGTGACTAAA GCTCTGATGA CTTCCTTGGA TAAGTTTAAT
CCCGTGTACA TGATGGCCAC CTCCGGGGCC CGCGGTAATA TCCAGCAGAT TCGACAGTTA
GCCGGTATGA GAGGCTTGAT GGCTGATCCT TCGGGCAGGA TTATTGACTT ACCGATTAAG
GCTAATTTCC GTGAAGGTCT TACTGTTTTG GAGTACTTCA TTTCCACGCA CGGTGCCAGA
AAAGGATTGG CCGATACAGC TCTCAGGACC GCTGATTCAG GATACTTGAC CAGGCGTTTA
GTTGATGTTT CGCAGGACGT CATAGTAAGA GAAGTAGATT GCGGCACCGC GGAAGGCATC
GAAGTGGGTG AGGTCAGGGA CGGTACGGAA ATTATTGAGA AGATTGAGGA TCGTATTGAG
GGCAGAGTAC TTGTAGAGGA TATTATTGAT CCAAGAACCG GAGAAATACT CGTGGCCTGC
CGAAATGAGG ATGGAACTCC CCATGAGGTT AGCAGAGAAG ATACAGAGCG AATAAAAGAT
GTCAACGAAA GAGAGAGCAA TGAAGAAATA CAGAAAAAGG TTGAAAGCAT TAAAATTCGT
TCGGTCTTAA CCTGCAAAAG CAGGTACGGA GTTTGCATTA ACTGCTATGG CCGCAACCTG
GCTACCGGGA GAAAGGTGGA TATCGGAGAA GCGGTAGGTA TTATTGCCGC TCAGTCTATC
GGTGAACCTG GTACACAGCT TACTATGCGT ACCTTCCATA CCGGGGGTGT GGCAGGAGAT
GATATAACTC AAGGTTTGCC GAGGGTAGAA GAATTATTTG AAGCCAGACG GCCCAAAGGC
CAGGCTGTGG TAACTGAAAT AACCGGTAAC GTGGAAATTA GGGAAGTAAA AGGACGCCGT
GAGATTGAGG TAACGGCTGT CGATTCCGGC GAGGCTACAG TTTATGCCGT TCCTTTTGGA
GCTCGCATTA AAGTTAGGGA TGGTCAGAGG GTAGAAGCGG GAGATGCCCT GACCGAAGGC
TCGGTAAATC CACATGACTT GCTTAAAATT AAAGGGACGC GGGGGGTACA AGTGTACCTG
CTGCAGGAAG TTCAGCGAGT ATACGGTTTG CAGGGCGTTG ACATTAATGA TAAACACATA
GAAGTGATGA TCAGGCAGAT GCTGCGCAAA GTAAAGGTTG AGGAACAGGG TGACACCTCA
TTGCTGCCGG GAGGTTTGAT TGATATCTTT GAATTTGAGG AAGAGAATAG CGCTGTGATA
GCTGAAGGTG GCGAACCTGC CACGGCCAGA GCCGTGCTCT TAGGTATCAC CAAGGCTTCC
TTGGCTACCG ACTCCTTCTT GTCAGCCGCC TCATTCCAGG AAACCACCAG AGTGCTGACT
GAGGCTGCTA TAAAAGGCAA GCTGGATCCC CTGTTAGGCT TGAAGGAAAA CGTTATTATC
GGTAAATTGG TGCCCGCCGG CACAGGTATG TCTCGTTACC GTAACATCGA ACTGCTGTCA
GGTAACAATG ACCAGGATGA TGCCGGTGTT ATGGATGAGA GGCAATAG
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| Protein sequence | MLDLNNFDRI RIGLASPEQI REWSSGEVKK PETINYRTLK PERDGLFCER IFGPTRDWEC
HCGKYKRVRY KGVVCDRCGV EVTRSKVRRE RLGHIELAAP VSHIWYFKGI PSRMGLLLDM
SPRALEKVLY FVSYIVTDQG NTTLIKKQLL TETEYRDNKE KFGNEFHAGM GAEAIKILLE
EINLNEMSRE LRAELKEVTG QRKIRAIRRL EVVEAFKKSG NRPEWMIMDV VPVIPPELRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPDII VRNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPRL QLHQCGLPKE
MALELFKPFV MKRLVNEGCA HNIKSAKRMV ERVRSEVWDV LEDVIKEHPV LLNRAPTLHR
LGIQAFEPIL VEGKAIQIHP MVCTAYNADF DGDQMAVHVP LSAEAQAEAR LLMLSANNIL
NPKDGKPVAI PTQDMVLGCY YLTVEKKGDF GEGKAFKDED EAIMAYYNKA CSLHARIRVR
RSDGKLLSTT IGRLIFNAVI PEELGYINKV VDKKVSSKIV DDCYRKLGYA ATANLLDGIK
TLGYEFATRA GVTVGVADVT IPEAKKEILL ESEQKVRDIE RQYRRGLITE DERYRQVINI
WNSATDRVTK ALMTSLDKFN PVYMMATSGA RGNIQQIRQL AGMRGLMADP SGRIIDLPIK
ANFREGLTVL EYFISTHGAR KGLADTALRT ADSGYLTRRL VDVSQDVIVR EVDCGTAEGI
EVGEVRDGTE IIEKIEDRIE GRVLVEDIID PRTGEILVAC RNEDGTPHEV SREDTERIKD
VNERESNEEI QKKVESIKIR SVLTCKSRYG VCINCYGRNL ATGRKVDIGE AVGIIAAQSI
GEPGTQLTMR TFHTGGVAGD DITQGLPRVE ELFEARRPKG QAVVTEITGN VEIREVKGRR
EIEVTAVDSG EATVYAVPFG ARIKVRDGQR VEAGDALTEG SVNPHDLLKI KGTRGVQVYL
LQEVQRVYGL QGVDINDKHI EVMIRQMLRK VKVEEQGDTS LLPGGLIDIF EFEEENSAVI
AEGGEPATAR AVLLGITKAS LATDSFLSAA SFQETTRVLT EAAIKGKLDP LLGLKENVII
GKLVPAGTGM SRYRNIELLS GNNDQDDAGV MDERQ
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